Parental gene:

SUB1, ENSCPOG00000005584

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_29:22804395..22817737(-)


>ENSCPOG00000005584
ATGCCTAAATCAAAGGAACTTGTTTCTTCAAGCTCTTCGGGCAGTGATTCTGACAGTGAAGTTGACAAAAAGTTAAAGAG
GAAAAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAGCAAAAGACTGGTGAAACTTCGAGGGCTCTGTCGTCATCTAAGC
AGAGCAGCAGCAGCAGGGATGATAACATGTTCCAGATTGGAAAAATGAGATATGTCAGTGTTCGGGATTTTAAAGGGAAA
GTTCTAATTGATATTAGAGAATATTGGATGGATCCAGAAGGTGAAATGAAACCAGGAAGAAAAGGTATTTCTTTAAATCC
AGAGCAGTGGAGCCAGCTGAAGGAGCAGATTTCTGACATTGATGATGCAGTAAGAAAACTG

Library Parental gene expression (RPM)
SRP017611_brain 68 .39 RPM
SRP017611_kidney 38 .84 RPM
SRP017611_liver 50 .53 RPM
SRP040447_lung 34 .86 RPM
SRP040447_skeletal_muscle 15 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018879 possible_ortholog 5 retrogenes
retro_cfam_1266, retro_cfam_1536, retro_cfam_1916, retro_cfam_2010, retro_cfam_215,
Callithrix jacchus ENSCJAG00000018718 ortholog_one2one 2 retrogenes
retro_cjac_1908, retro_cjac_484,
Dasypus novemcinctus ENSDNOG00000007611 ortholog_one2one 5 retrogenes
retro_dnov_1230, retro_dnov_161, retro_dnov_1822, retro_dnov_2156, retro_dnov_400,
Homo sapiens ENSG00000113387 ortholog_one2one 2 retrogenes
retro_hsap_1662, retro_hsap_3934,
Gorilla gorilla ENSGGOG00000027033 ortholog_one2one 3 retrogenes
retro_ggor_1063, retro_ggor_1254, retro_ggor_2645,
Loxodonta africana ENSLAFG00000011006 ortholog_one2many 1 retrogene
retro_lafr_19,
Macropus eugenii ENSMEUG00000007770 ortholog_one2one 4 retrogenes
retro_meug_1155, retro_meug_1820, retro_meug_2038, retro_meug_500,
Microcebus murinus ENSMICG00000014535 ortholog_one2one 2 retrogenes
retro_mmur_1115, retro_mmur_17,
Myotis lucifugus ENSMLUG00000013685 ortholog_one2many 6 retrogenes
retro_mluc_1649, retro_mluc_1696, retro_mluc_1785, retro_mluc_226, retro_mluc_2346, retro_mluc_621,
Macaca mulatta ENSMMUG00000011470 ortholog_one2one 2 retrogenes
retro_mmul_2318, retro_mmul_993,
Monodelphis domestica ENSMODG00000020410 ortholog_one2one 3 retrogenes
retro_mdom_840, retro_mdom_841, retro_mdom_895,
Mustela putorius furo ENSMPUG00000015185 possible_ortholog 2 retrogenes
retro_mputfur_186, retro_mputfur_295,
Mus musculus ENSMUSG00000022205 ortholog_one2one 4 retrogenes
retro_mmus_1118, retro_mmus_2304, retro_mmus_2586, retro_mmus_3606,
Oryctolagus cuniculus ENSOCUG00000006262 possible_ortholog 5 retrogenes
retro_ocun_1227, retro_ocun_1313, retro_ocun_1661, retro_ocun_1714, retro_ocun_902,
Otolemur garnettii ENSOGAG00000009012 ortholog_one2one 6 retrogenes
retro_ogar_1130, retro_ogar_1272, retro_ogar_218, retro_ogar_2481, retro_ogar_340, retro_ogar_525,
Pongo abelii ENSPPYG00000015379 ortholog_one2one 2 retrogenes
retro_pabe_124, retro_pabe_1371,
Rattus norvegicus ENSRNOG00000050563 ortholog_one2one 12 retrogenes
retro_rnor_1040, retro_rnor_1137, retro_rnor_1203, retro_rnor_1496, retro_rnor_1692, retro_rnor_1693, retro_rnor_1863, retro_rnor_2721, retro_rnor_2986, retro_rnor_420, retro_rnor_572, retro_rnor_735,
Sarcophilus harrisii ENSSHAG00000014986 ortholog_one2one 1 retrogene
retro_shar_628,
Tarsius syrichta ENSTSYG00000014069 ortholog_one2one 2 retrogenes
retro_tsyr_528, retro_tsyr_895,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_834 75.78 99.21
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2. retro_cpor_854 61.54 98.43
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3. retro_cpor_1114 81.25 99.21
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4. retro_cpor_1481 51.16 66.14
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Download FASTA sequences of all ENSCPOG00000005584 retrocopies