Parental gene:

IPO5, ENSCPOG00000004827

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_5:26014784..26054558(-)


>ENSCPOG00000004827
GAAACCTATGAGAATATCCCAGGCCAGTCAAAGATCACATTTCTCTTACAAGCCATCAGGAACACAACAGCTGCTGAGGA
GGCTAGACAAATGGCTGCCGTCCTCCTGCGACGCCTTTTGTCCTCTGCGTTTGATGAAGTTTATCCAACTCTCCCATCGG
ATGTTCAGACTGCCATCAAGAGTGAACTGCTAATGATCATTCAGATGGAAACGCAATCTAGCATGAGGAAGAAAATTTGT
GACATTGCTGCAGAACTGGCCAGGAATTTAATAGATGAGGATGGCAACAACCAGTGGCCTGAAGGTTTGAAGTTTCTTTT
TGATTCCGTCAGCTCTCAAAACATGGGATTGCGAGAAGCTGCGCTTCACATATTCTGGAACTTTCCTGGAATTTTTGGAA
ACCAACAACAGCACTATTTAGATGTCATCAAACGGATGTTAGTTCAGTGTATGCAAGATCAAGAGCATCCATCGATCAGG
ACATTATCTGCTAGAGCCACAGCTGCATTTATACTCGCAAATGAGCACAATGTTGCTCTCTTCAAACATTTCGCTGACTT
GTTACCTGGGTTCTTACAGGCTGTAAATGACTCGTGCTACCAGAATGATGATTCGGTCCTAAAGTCCCTTGTTGAAATCG
CAGATACTGTTCCAAAGTATTTGCGTCCTCACTTGGAAGCAACTCTGCAATTAAGTCTAAAGCTGTGTGGAGACACCAGC
CTCAATAACATGCAGCGCCAGCTTGCCCTGGAAGTGATCGTGACCCTCTCAGAGACTGCGGCGGCTATGTTAAGAAAACA
TACTAATATTGTTGCACAGACAATTCCTCAGATGTTGGCGATGATGGTTGATCTGGAAGAGGATGAGGACTGGGCCAATG
CAGATGAGCTGGAGGATGACGACTTTGACAGCAACGCGGTGGCTGGTGAGAGTGCTTTAGACCGGATGGCTTGTGGACTT
GGTGGAAAGCTTGTTCTGCCGATGATCAAGGAACACATTATGCAGATGCTTCAAAACCCTGACTGGAAATACCGGCACGC
AGGATTGATGGCCTTGTCTGCCATTGGCGAAGGGTGCCACCAGCAAATGGAGGGGATTCTAAATGAGATAGTCAATTTTG
TTTTACTTTTCCTTCAGGATCCTCATCCAAGAGTAAGGTATGCAGCCTGCAACGCTGTGGGACAGATGGCTACAGATTTT
GCACCTGGTTTCCAGAAGAAATTTCATGAGAAGGTGATTGCAGCTCTGCTGCAGACCATGGAAGACCAGGGCAACCAGCG
GGTACAGGCCCATGCTGCTGCCGCTCTCATCAACTTCACTGAAGACTGTCCCAAGACATTGCTCATCCCATACCTGGATA
ACTTGGTGAAGCATCTGCATTCCATTATGGTGCTGAAGCTTCAGGAGTTGATTCAGAAAGGCACCAAGTTAGTTTTGGAA
CAAGTTGTGACATCCATTGCATCAGTTGCAGATACTGCAGAAGAAAAATTTGTCCCCTACTATGATTTATTTATGCCATC
ACTTAAGCACATCGTTGAGAATGCAGTACAGAAGGAACTCAGACTTCTGAGAGGAAAAACCATTGAATGTATCAGCCTCA
TCGGCCTGGCAGTTGGGAAGGAAAAGTTCATGCAGGATGCATCAGATGTGATGCAGCTGTTACTGAAGACCCAGACAGAC
TTCAACGACATGGAGGATGACGACCCTCAGATCTCTTACATGATCTCGGCCTGGGCCAGAATGTGCAAAATCCTTGGAAA
GGAATTTCAGCAGTATCTTCCAGTGGTAATGGGGCCACTCATGAAGACGGCGTCCATCAAGCCTGAAGTAGCCCTGTTGG
ACACCCAGGACATGGAGAACATGAGCGATGATGATGGCTGGGAATTTGTGAACCTTGGAGATCAACAGAGTTTTGGTATT
AAAACTGCAGGACTGGAAGAAAAATCAACTGCTTGCCAGATGTTGGTTTGCTATGCTAAGGAATTAAAGGAAGGTTTTGT
GGAATACACTGAGCAAGTCGTCAAGTTGATGGTCCCTTTACTGAAATTTTACTTCCATGATGATATCCTACAACAGGTGC
TGTGTTTCCTTAACACCCCACGTGTCCGTGTGGCGGCAGCGGAGTCCATGCCCCTTCTCCTGGAGTGCGCTCGAGTGCGG
GGCCCCGAGTACCTCACACAGATGTGGCACTTCATGTGCGATGCACTGATCAAGGCCATCGGCACGGAGCCAGACTCGGA
TGTCCTCTCGGAGATAATGCACTCGTTCGCGAAGTGCATTGAGGTAATGGGCGACGGGTGCCTCAACAATGAGCACTTCG
AGGAGCTGGGAGGCATTTTGAAAGCAAAGCTCGAAGAACATTTTAAAAATCAGGAACTGCGACAAGTTAAAAGGCAAGAT
GAAGACTATGACGAACAGGTTGAAGAATCCCTACAAGACGAGGACGATAATGACGTTTATATACTGACCAAAGTGTCAGA
TATTTTACACTCGATATTCAGTAGCTACAAGGAGAAGGTGTTACCGTGGTTTGAGCAGCTGCTTCCATTAATTGTCAACC
TGATTTGTCCCCATAGGCCATGGCCCGACCGACAGTGGGGGCTATGCATCTTTGACGATGTCATCGAACACTGTAGTCCA
GCCTCATTTAAGTATGCAGAGTACTTCTTAAGGCCGATGCTCCAATATGTGTGTGACAGCAGCCCGGAAGTCAGGCAAGC
GGCCGCATACGGCCTGGGAGTCATGGCGCAGTATGGAGGAGACAGCTACCGCCCTTTCTGTACAGAAGCTCTTCCATTGC
TTGTTAGAGTTATTCAGTCTGGAGATTCTAAGACCAAAGAAAATGTCAATGCCACTGAGAACTGTATCTCAGCAGTAGGG
AAAATTATGAAGTTCAAGCCTGACTGTGTAAATGTGGAAGAAATCCTGCCACACTGGTTGTCGTGGCTTCCGCTCCATGA
GGACAAAGAAGAAGCTGTTCAGACATTCAGTTATCTGTGCGACCTGATTGAAAGTAATCATCCAATCGTTCTTGGCCCCA
ACAATACCAATCTGCCCAAAATATTCAGTATAATTGCGGAAGGAGAGATACATGAGGCCATTAAACATGAAGACCCATGT
GCCAAACGCTTGGCCAATGTGGTTCGCCAGGTACAGACTTCTGGAGGATTGTGGACCGAGTGCGTTTCACAGCTCAGTCC
CGAGCAGCAGGCGGCCATACAGGAGCTCCTGAACTCTGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 91 .68 RPM
SRP017611_kidney 81 .45 RPM
SRP017611_liver 61 .68 RPM
SRP040447_lung 107 .82 RPM
SRP040447_skeletal_muscle 356 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003784 ortholog_one2one 1 retrogene
retro_amel_3,
Bos taurus ENSBTAG00000039374 ortholog_one2one 1 retrogene
retro_btau_104,
Canis familiaris ENSCAFG00000005561 ortholog_one2one 1 retrogene
retro_cfam_452,
Choloepus hoffmanni ENSCHOG00000006061 ortholog_one2many 1 retrogene
retro_chof_11,
Equus caballus ENSECAG00000014808 ortholog_one2one 1 retrogene
retro_ecab_37,
Felis catus ENSFCAG00000025657 ortholog_one2one 1 retrogene
retro_fcat_24,
Homo sapiens ENSG00000065150 ortholog_one2one 1 retrogene
retro_hsap_57,
Gorilla gorilla ENSGGOG00000008742 ortholog_one2one 1 retrogene
retro_ggor_47,
Loxodonta africana ENSLAFG00000016190 ortholog_one2one 1 retrogene
retro_lafr_22,
Myotis lucifugus ENSMLUG00000006500 ortholog_one2one 1 retrogene
retro_mluc_295,
Mus musculus ENSMUSG00000030662 ortholog_one2one 2 retrogenes
retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys ENSNLEG00000007831 ortholog_one2one 2 retrogenes
retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus ENSOCUG00000003898 ortholog_one2one 1 retrogene
retro_ocun_143,
Otolemur garnettii ENSOGAG00000007570 ortholog_one2one 1 retrogene
retro_ogar_169,
Pongo abelii ENSPPYG00000005458 ortholog_one2one 1 retrogene
retro_pabe_172,
Pan troglodytes ENSPTRG00000005984 ortholog_one2one 2 retrogenes
retro_ptro_49, retro_ptro_745,
Pteropus vampyrus ENSPVAG00000004516 ortholog_one2one 1 retrogene
retro_pvam_8,
Rattus norvegicus ENSRNOG00000010989 ortholog_one2one 1 retrogene
retro_rnor_240,
Sus scrofa ENSSSCG00000009509 ortholog_one2one 1 retrogene
retro_sscr_24,
Ictidomys tridecemlineatus ENSSTOG00000011164 ortholog_one2one 1 retrogene
retro_itri_32,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_57 77.65 63.80
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2. retro_cpor_265 95.51 63.80
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Download FASTA sequences of all ENSCPOG00000004827 retrocopies