Parental gene:

ENSCPOG00000000948

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_10:8291594..8302314(+)


>ENSCPOG00000000948
TCTTTGTCTTGCAGGTATTTCATGCATGGGGTTTGTAAGGAAGGAGATAACTGTCGCTACTCACATGACCTCTCCGACAG
TCCCTATGGTGTAGTTTGCAAGTATTTCCAGCGAGGGTACTGTGTGTATGGAGACCGCTGCAGATATGAGCACAGCAAAC
CATTGAAACAGGAAGAAGCAGCTGCTACAGATCTAACCACAAAACCATCCCTTGCCGCTGCCCCAAGTCTCTCCTCCGGT
GCTGGACAACTTGTGGAAATGAATACGGACGAGGCTGAGTCCAGAAATGCAAACCTCCCTGCTGTGGGCGCAGGGTCTGA
GGACTGGGTGAACGCCATCGAGTTTGTGCCAGGGCAGCCCTACTGTGGCCGCACCGCCCCGGCCTGCACAGAGACCCCCG
TGCAGGGCCCAGTGCCCAAGGCAGAGTCTGAGAAGGAGCCAGCTGCAGTGGAGACCAAGAAGCAGCTCTGCCCCTATGCT
GCCGTGGGAGAGTGCCGCTACGGGGAGAACTGTGTGTACCTGCACGGGGACGCCTGCGACATGTGTGGGCTGCAGGTCCT
GCACCCCGTCGATACGGCCCAGAGGTCCCAGCACATAAAATCTTGCATCGAGGCCCATGAGAAGGACATGGAGCTGTCCT
TTGCCGTGCAGCGCAGCAAGGACATGGTGTGTGGCATCTGCATGGAGGTGGTGTATGAGAAAGCCAACCCCAGTGAGCGC
CGCTTCGGCATCCTCTCCAACTGCAGCCACACCTACTGTCTCAAGTGTATTCGCAAGTGGAGGAGTGCTAAGCAGTTTGA
GAGCAAGATCATAAAGTCCTGCCCCGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGGGTGGAGGAGA
AAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGGAGGCAATGAGCAACAAGGCATGCAGGTATTTTGATGAAGGCCGT
GGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCACAGAGACAGAA
AGTGGGAACATCAAGCAGATACCGGGCCCAACGGAGGAACCACTTCTGGGAGCTCATTGAGGAAAGAGAGAACAGCAGCC
CCTTTGACAACGACGAAGAGGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTGCAGGTGGGGAC
GACGAGCTGACTGACTCTGAGGACGAGTGGGACTTGTATCATGATGAGCTGGAAGACTTTTATGACTTGGACCTA

Library Parental gene expression (RPM)
SRP017611_brain 34 .97 RPM
SRP017611_kidney 49 .41 RPM
SRP017611_liver 42 .40 RPM
SRP040447_lung 64 .04 RPM
SRP040447_skeletal_muscle 33 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000008306 possible_ortholog 2 retrogenes
retro_btau_401, retro_btau_943,
Canis familiaris ENSCAFG00000003953 possible_ortholog 2 retrogenes
retro_cfam_2157, retro_cfam_253,
Choloepus hoffmanni ENSCHOG00000011015 possible_ortholog 3 retrogenes
retro_chof_173, retro_chof_2357, retro_chof_89,
Callithrix jacchus ENSCJAG00000013474 possible_ortholog 2 retrogenes
retro_cjac_210, retro_cjac_2991,
Dasypus novemcinctus ENSDNOG00000019564 possible_ortholog 2 retrogenes
retro_dnov_1011, retro_dnov_388,
Erinaceus europaeus ENSEEUG00000001133 possible_ortholog 1 retrogene
retro_eeur_643,
Felis catus ENSFCAG00000024942 possible_ortholog 1 retrogene
retro_fcat_67,
Homo sapiens ENSG00000133606 possible_ortholog 4 retrogenes
retro_hsap_1140, retro_hsap_4197, retro_hsap_4676, retro_hsap_4859,
Gorilla gorilla ENSGGOG00000023977 possible_ortholog 4 retrogenes
retro_ggor_119, retro_ggor_2813, retro_ggor_3031, retro_ggor_381,
Macropus eugenii ENSMEUG00000007399 possible_ortholog 1 retrogene
retro_meug_1659,
Microcebus murinus ENSMICG00000002114 possible_ortholog 1 retrogene
retro_mmur_1184,
Macaca mulatta ENSMMUG00000010420 possible_ortholog 3 retrogenes
retro_mmul_191, retro_mmul_2597, retro_mmul_76,
Mus musculus ENSMUSG00000029922 possible_ortholog 1 retrogene
retro_mmus_2663,
Nomascus leucogenys ENSNLEG00000001921 possible_ortholog 4 retrogenes
retro_nleu_1027, retro_nleu_2167, retro_nleu_33, retro_nleu_939,
Otolemur garnettii ENSOGAG00000009877 possible_ortholog 2 retrogenes
retro_ogar_3468, retro_ogar_424,
Ochotona princeps ENSOPRG00000010353 ortholog_one2one 1 retrogene
retro_opri_1073,
Procavia capensis ENSPCAG00000014683 ortholog_one2one 1 retrogene
retro_pcap_19,
Pongo abelii ENSPPYG00000018057 possible_ortholog 3 retrogenes
retro_pabe_3435, retro_pabe_3776, retro_pabe_947,
Pan troglodytes ENSPTRG00000019766 possible_ortholog 5 retrogenes
retro_ptro_2849, retro_ptro_3106, retro_ptro_3234, retro_ptro_75, retro_ptro_776,
Sus scrofa ENSSSCG00000016498 possible_ortholog 2 retrogenes
retro_sscr_43, retro_sscr_637,
Tupaia belangeri ENSTBEG00000004564 ortholog_one2one 2 retrogenes
retro_tbel_1410, retro_tbel_71,
Tarsius syrichta ENSTSYG00000009996 possible_ortholog 3 retrogenes
retro_tsyr_1256, retro_tsyr_1525, retro_tsyr_508,
Tursiops truncatus ENSTTRG00000009528 possible_ortholog 2 retrogenes
retro_ttru_1064, retro_ttru_1128,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_109 79.50 74.35
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Download FASTA sequences of all ENSCPOG00000000948 retrocopies