Parental gene:

ENSCJAG00000016338

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:139565001..139567867(-)


>ENSCJAG00000016338
ATGGCCTCCAGCTTTAAGAAGGCAAACATGGCGTCAAGTGCCCAGCGAAAAAGAATGAGTCCTAAGCCTGAGCTTACAGA
AGAGCAGAAGCAGGAGATCCGGGAAGCGTTTGATCTTTTTGATGCAGATGGAACTGGCAGCATAGATGTTAAGGAACTTA
AGGTGGCAATGAGGGCCCTGGGCTTTGAACCCAAGAAAGAAGAAATTAAGAAAATGATAAGTGAAATTGATAAGGAAGGG
ACAGGAAAAATGAACTTTGGTGACTTTTTAACTGTGATGACCCAGAAAATGTCTGAGAAAGATACCAAAGAAGAAATCCT
GAAAGCTTTCAAGCTCTTCGATGATGATGAAACTGGGAAGATTTCGTTCAAAAATCTGAAACGCGTGGCCAAGGAGTTGG
GTGAGAACCTGACTGATGAGGAGCTGCAGGAAATGATTGATGAAGCTGATCGAGATGGAGATGGAGAGGTCAGTGAGCAA
GAGTTCCTGCGCATCATGAAAAAGACCAGCCTTTAT

Library Parental gene expression (RPM)
SRP051959_colon 4 .95 RPM
SRP051959_heart 6 .31 RPM
SRP051959_kidney 14 .44 RPM
SRP051959_liver 7 .04 RPM
SRP051959_lung 13 .23 RPM
SRP051959_lymph_node 6 .28 RPM
SRP051959_skeletal_muscle 6 .07 RPM
SRP051959_spleen 7 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000364 ortholog_one2many 1 retrogene
retro_amel_56,
Bos taurus ENSBTAG00000007844 ortholog_one2many 1 retrogene
retro_btau_170,
Canis familiaris ENSCAFG00000019170 ortholog_many2many 1 retrogene
retro_cfam_199,
Choloepus hoffmanni ENSCHOG00000010244 ortholog_one2many 1 retrogene
retro_chof_39,
Callithrix jacchus ENSCJAG00000016907 within_species_paralog 1 retrogene
retro_cjac_3944,
Cavia porcellus ENSCPOG00000012081 ortholog_many2many 2 retrogenes
retro_cpor_1250, retro_cpor_21,
Equus caballus ENSECAG00000000796 ortholog_one2many 1 retrogene
retro_ecab_49,
Felis catus ENSFCAG00000004901 ortholog_one2many 1 retrogene
retro_fcat_47,
Homo sapiens ENSG00000147400 ortholog_one2many 1 retrogene
retro_hsap_71,
Gorilla gorilla ENSGGOG00000011378 ortholog_one2many 1 retrogene
retro_ggor_74,
Loxodonta africana ENSLAFG00000014424 ortholog_one2many 1 retrogene
retro_lafr_121,
Microcebus murinus ENSMICG00000005862 ortholog_one2many 2 retrogenes
retro_mmur_122, retro_mmur_21,
Myotis lucifugus ENSMLUG00000014520 possible_ortholog 2 retrogenes
retro_mluc_320, retro_mluc_370,
Macaca mulatta ENSMMUG00000020743 ortholog_one2many 2 retrogenes
retro_mmul_1127, retro_mmul_176,
Mustela putorius furo ENSMPUG00000011858 ortholog_one2many 1 retrogene
retro_mputfur_386,
Mus musculus ENSMUSG00000031347 ortholog_one2many 2 retrogenes
retro_mmus_107, retro_mmus_838,
Nomascus leucogenys ENSNLEG00000013860 ortholog_one2many 1 retrogene
retro_nleu_1221,
Oryctolagus cuniculus ENSOCUG00000007897 ortholog_many2many 1 retrogene
retro_ocun_180,
Otolemur garnettii ENSOGAG00000005301 ortholog_many2many 1 retrogene
retro_ogar_236,
Procavia capensis ENSPCAG00000003203 ortholog_many2many 1 retrogene
retro_pcap_149,
Procavia capensis ENSPCAG00000007778 ortholog_many2many 1 retrogene
retro_pcap_364,
Pongo abelii ENSPPYG00000020833 ortholog_one2many 1 retrogene
retro_pabe_58,
Pan troglodytes ENSPTRG00000022389 ortholog_one2many 1 retrogene
retro_ptro_108,
Rattus norvegicus ENSRNOG00000017059 ortholog_one2many 5 retrogenes
retro_rnor_2376, retro_rnor_2394, retro_rnor_2920, retro_rnor_304, retro_rnor_775,
Sus scrofa ENSSSCG00000012757 ortholog_one2many 3 retrogenes
retro_sscr_1175, retro_sscr_57, retro_sscr_822,
Ictidomys tridecemlineatus ENSSTOG00000023853 ortholog_one2many 2 retrogenes
retro_itri_636, retro_itri_91,
Tarsius syrichta ENSTSYG00000003831 ortholog_one2many 2 retrogenes
retro_tsyr_1142, retro_tsyr_36,
Tursiops truncatus ENSTTRG00000001236 ortholog_one2many 2 retrogenes
retro_ttru_32, retro_ttru_335,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_106 94.74 99.42
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2. retro_cjac_185 95.93 100.00
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3. retro_cjac_316 83.72 100.00
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Download FASTA sequences of all ENSCJAG00000016338 retrocopies