Parental gene:

NCBP2, ENSCJAG00000013735

Aliases:None
Description:nuclear cap binding protein subunit 2, 20kDa [Source:HGNC Symbol;Acc:7659]
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:18036713..18044255(+)


>ENSCJAG00000013735
ATGTCGGGTGGCCTCCTGAAGGCGCTGCGCAGCGACTCCTACGTGGAGCTGAGCCAGTACCGGGACCAGCACTTCCGGGG
TGACAATGAAGAACAAGAAAAATTACTCAAGAAAAGCTGTACGTTATATGTTGGAAATCTTTCTTTTTACACAACTGAAG
AACAAATCTATGAACTCTTCAGCAAAAGTGGTGACATAAAGAAAATCATTATGGGTCTGGATAAAATGAAGAAAACAGCA
TGTGGATTCTGTTTTGTGGAATATTACTCACGAGCAGATGCAGAAAATGCCATGCGGTACATAAATGGAACTCGTCTAGA
TGACCGAATCATTCGCACAGACTGGGATGCAGGCTTTAAGGAGGGCAGGCAGTATGGCCGCGGGCGATCTGGGGGCCAGG
TACGGGATGAGTATCGGCAGGACTATGATGCTGGGAGAGGCGGCTATGGAAAACTGGCACAGAACCAGTGA

Library Parental gene expression (RPM)
SRP051959_colon 15 .80 RPM
SRP051959_heart 24 .38 RPM
SRP051959_kidney 25 .71 RPM
SRP051959_liver 15 .70 RPM
SRP051959_lung 26 .60 RPM
SRP051959_lymph_node 34 .18 RPM
SRP051959_skeletal_muscle 25 .44 RPM
SRP051959_spleen 34 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003664 ortholog_one2many 2 retrogenes
retro_amel_113, retro_amel_62,
Bos taurus ENSBTAG00000008873 ortholog_one2one 1 retrogene
retro_btau_1819,
Canis familiaris ENSCAFG00000013100 ortholog_one2one 2 retrogenes
retro_cfam_152, retro_cfam_2195,
Cavia porcellus ENSCPOG00000002976 ortholog_one2one 1 retrogene
retro_cpor_611,
Equus caballus ENSECAG00000016153 ortholog_one2one 1 retrogene
retro_ecab_79,
Felis catus ENSFCAG00000029865 ortholog_one2one 2 retrogenes
retro_fcat_1936, retro_fcat_561,
Homo sapiens ENSG00000114503 ortholog_one2one 1 retrogene
retro_hsap_5,
Loxodonta africana ENSLAFG00000006372 ortholog_one2one 1 retrogene
retro_lafr_129,
Macropus eugenii ENSMEUG00000004730 ortholog_one2many 1 retrogene
retro_meug_34,
Microcebus murinus ENSMICG00000003162 ortholog_one2one 1 retrogene
retro_mmur_488,
Myotis lucifugus ENSMLUG00000017500 ortholog_one2one 2 retrogenes
retro_mluc_355, retro_mluc_592,
Mustela putorius furo ENSMPUG00000003806 ortholog_one2one 1 retrogene
retro_mputfur_9,
Mus musculus ENSMUSG00000022774 ortholog_one2one 2 retrogenes
retro_mmus_2381, retro_mmus_2645,
Nomascus leucogenys ENSNLEG00000001727 ortholog_one2one 1 retrogene
retro_nleu_1239,
Oryctolagus cuniculus ENSOCUG00000006738 ortholog_one2one 2 retrogenes
retro_ocun_1887, retro_ocun_833,
Otolemur garnettii ENSOGAG00000005009 ortholog_one2one 6 retrogenes
retro_ogar_3151, retro_ogar_3152, retro_ogar_3153, retro_ogar_3160, retro_ogar_3161, retro_ogar_3162,
Pongo abelii ENSPPYG00000014449 ortholog_one2one 1 retrogene
retro_pabe_85,
Pan troglodytes ENSPTRG00000015789 ortholog_one2one 1 retrogene
retro_ptro_3151,
Pteropus vampyrus ENSPVAG00000017273 ortholog_one2one 3 retrogenes
retro_pvam_238, retro_pvam_305, retro_pvam_939,
Sarcophilus harrisii ENSSHAG00000004363 ortholog_one2many 2 retrogenes
retro_shar_161, retro_shar_46,
Tupaia belangeri ENSTBEG00000015222 ortholog_one2one 3 retrogenes
retro_tbel_2153, retro_tbel_3367, retro_tbel_758,
Tarsius syrichta ENSTSYG00000014263 ortholog_one2one 1 retrogene
retro_tsyr_2008,
Tursiops truncatus ENSTTRG00000013908 ortholog_one2one 2 retrogenes
retro_ttru_442, retro_ttru_826,
Vicugna pacos ENSVPAG00000010369 ortholog_one2one 1 retrogene
retro_vpac_493,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3139 83.54 100.00
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2. retro_cjac_4103 65.10 95.51
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Download FASTA sequences of all ENSCJAG00000013735 retrocopies