Parental gene:

ENSCJAG00000011247

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:125865575..125867749(+)


>ENSCJAG00000011247
ATGGGTAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGCCACCGACGAGACCAGAAGTGGCATGATAAACAGTA
CAAGAAAGCCCATTTGGGCACAGCCCTGAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATCGTGCTAGAAA
AAGTAGGAGTTGAAGCCAAGCAGCCAAATTCTGCCATTAGGAAGTGTGTCAGGGTCCAGCTGATCAAGAATGGCAAGAAA
ATCACAGCCTTTGTACCCAATGATGGTTGCTTGAACTTTATTGAGGAAAACGATGAAGTTCTGGTAGCTGGATTTGGTCG
CAAAGGTCATGCTGTTGGTGATATTCCTGGAGTTCGCTTTAAGGTTGTCAAAGTAGCCAATGTCTCTCTTTTGGCGCTAT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA

Library Parental gene expression (RPM)
SRP051959_colon 98 .42 RPM
SRP051959_heart 116 .80 RPM
SRP051959_kidney 105 .36 RPM
SRP051959_liver 120 .45 RPM
SRP051959_lung 93 .90 RPM
SRP051959_lymph_node 153 .76 RPM
SRP051959_skeletal_muscle 128 .76 RPM
SRP051959_spleen 154 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000011136 possible_ortholog 1 retrogene
retro_acar_85,
Ailuropoda melanoleuca ENSAMEG00000015966 possible_ortholog 3 retrogenes
retro_amel_1096, retro_amel_341, retro_amel_751,
Bos taurus ENSBTAG00000013358 possible_ortholog 3 retrogenes
retro_btau_173, retro_btau_205, retro_btau_80,
Canis familiaris ENSCAFG00000030896 ortholog_one2one 7 retrogenes
retro_cfam_1145, retro_cfam_1305, retro_cfam_1415, retro_cfam_1743, retro_cfam_2105, retro_cfam_375, retro_cfam_436,
Cavia porcellus ENSCPOG00000022705 possible_ortholog 2 retrogenes
retro_cpor_1182, retro_cpor_1377,
Dipodomys ordii ENSDORG00000001813 possible_ortholog 2 retrogenes
retro_dord_187, retro_dord_93,
Equus caballus ENSECAG00000020523 possible_ortholog 2 retrogenes
retro_ecab_275, retro_ecab_500,
Erinaceus europaeus ENSEEUG00000001849 possible_ortholog 7 retrogenes
retro_eeur_102, retro_eeur_262, retro_eeur_326, retro_eeur_462, retro_eeur_515, retro_eeur_53, retro_eeur_662,
Felis catus ENSFCAG00000008839 possible_ortholog 7 retrogenes
retro_fcat_1557, retro_fcat_1601, retro_fcat_1876, retro_fcat_2000, retro_fcat_5, retro_fcat_609, retro_fcat_644,
Homo sapiens ENSG00000186468 possible_ortholog 6 retrogenes
retro_hsap_1778, retro_hsap_2940, retro_hsap_3107, retro_hsap_3287, retro_hsap_3989, retro_hsap_4697,
Gorilla gorilla ENSGGOG00000025014 possible_ortholog 6 retrogenes
retro_ggor_1316, retro_ggor_2038, retro_ggor_2131, retro_ggor_2237, retro_ggor_2677, retro_ggor_286,
Loxodonta africana ENSLAFG00000031506 possible_ortholog 3 retrogenes
retro_lafr_1117, retro_lafr_1216, retro_lafr_606,
Macropus eugenii ENSMEUG00000012931 possible_ortholog 1 retrogene
retro_meug_811,
Microcebus murinus ENSMICG00000013964 possible_ortholog 2 retrogenes
retro_mmur_1354, retro_mmur_872,
Myotis lucifugus ENSMLUG00000013939 possible_ortholog 2 retrogenes
retro_mluc_1676, retro_mluc_2183,
Macaca mulatta ENSMMUG00000003578 ortholog_one2one 4 retrogenes
retro_mmul_1239, retro_mmul_1974, retro_mmul_2305, retro_mmul_852,
Monodelphis domestica ENSMODG00000020255 possible_ortholog 3 retrogenes
retro_mdom_1518, retro_mdom_1612, retro_mdom_395,
Mustela putorius furo ENSMPUG00000008114 possible_ortholog 1 retrogene
retro_mputfur_1298,
Mus musculus ENSMUSG00000049517 possible_ortholog 12 retrogenes
retro_mmus_2151, retro_mmus_2200, retro_mmus_2690, retro_mmus_2812, retro_mmus_3118, retro_mmus_3163, retro_mmus_3168, retro_mmus_323, retro_mmus_3619, retro_mmus_365, retro_mmus_836, retro_mmus_848,
Nomascus leucogenys ENSNLEG00000013203 possible_ortholog 3 retrogenes
retro_nleu_1353, retro_nleu_1909, retro_nleu_764,
Oryctolagus cuniculus ENSOCUG00000010363 possible_ortholog 2 retrogenes
retro_ocun_195, retro_ocun_95,
Otolemur garnettii ENSOGAG00000008163 possible_ortholog 11 retrogenes
retro_ogar_1177, retro_ogar_1303, retro_ogar_1785, retro_ogar_1849, retro_ogar_238, retro_ogar_2479, retro_ogar_253, retro_ogar_2695, retro_ogar_2823, retro_ogar_3519, retro_ogar_364,
Pongo abelii ENSPPYG00000015608 possible_ortholog 7 retrogenes
retro_pabe_1538, retro_pabe_1585, retro_pabe_19, retro_pabe_2515, retro_pabe_2567, retro_pabe_2716, retro_pabe_3129,
Pan troglodytes ENSPTRG00000017052 possible_ortholog 6 retrogenes
retro_ptro_1190, retro_ptro_2056, retro_ptro_2223, retro_ptro_2707, retro_ptro_3075, retro_ptro_3122,
Pteropus vampyrus ENSPVAG00000002083 possible_ortholog 4 retrogenes
retro_pvam_1483, retro_pvam_782, retro_pvam_80, retro_pvam_922,
Rattus norvegicus ENSRNOG00000016580 possible_ortholog 12 retrogenes
retro_rnor_100, retro_rnor_1394, retro_rnor_149, retro_rnor_1691, retro_rnor_1941, retro_rnor_1959, retro_rnor_1982, retro_rnor_2119, retro_rnor_2182, retro_rnor_2492, retro_rnor_525, retro_rnor_559,
Sorex araneus ENSSARG00000008904 possible_ortholog 8 retrogenes
retro_sara_194, retro_sara_346, retro_sara_422, retro_sara_481, retro_sara_540, retro_sara_647, retro_sara_648, retro_sara_714,
Sarcophilus harrisii ENSSHAG00000008347 possible_ortholog 2 retrogenes
retro_shar_257, retro_shar_348,
Sus scrofa ENSSSCG00000014133 possible_ortholog 1 retrogene
retro_sscr_92,
Ictidomys tridecemlineatus ENSSTOG00000000824 possible_ortholog 3 retrogenes
retro_itri_1418, retro_itri_204, retro_itri_377,
Tarsius syrichta ENSTSYG00000011385 possible_ortholog 5 retrogenes
retro_tsyr_1656, retro_tsyr_1946, retro_tsyr_406, retro_tsyr_462, retro_tsyr_933,
Tursiops truncatus ENSTTRG00000014491 possible_ortholog 6 retrogenes
retro_ttru_1253, retro_ttru_1555, retro_ttru_186, retro_ttru_458, retro_ttru_487, retro_ttru_578,
Vicugna pacos ENSVPAG00000009427 possible_ortholog 7 retrogenes
retro_vpac_195, retro_vpac_239, retro_vpac_393, retro_vpac_543, retro_vpac_56, retro_vpac_598, retro_vpac_81,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_126 83.92 100.00
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2. retro_cjac_256 99.30 100.00
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Download FASTA sequences of all ENSCJAG00000011247 retrocopies