Parental gene:

ENSCJAG00000009494

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:11186573..11215352(-)


>ENSCJAG00000009494
ATGTCTACTCGGGAGTCCTTTAACCCGGAAAGTTACGAATTGGACAAGAGCTTCCGGCTAACCAGATTCACTGAACTGAA
GGGTACAGGCTGCAAAGTGCCCCAAGATGTCCTGCAGAAATTGCTGGAATCTTTACAGGAGAACCACTTCCAAGAAGATG
AGCAGTTTCTGGGAGCTGTTATGCCAAGGCTTGGCATTGGAATGGATACTTGTGTCATTCCTTTGAGGCATGGTGGGCTT
TCCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGACGACCCTTACATGATGGGCAGGATAGCATGTGCCAATGT
CCTCAGTGACCTTTACGCAATGGGGGTCACGGAATGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACCG
ACAGGGAAAGGGATAAAGTGATGCCTCTGATTATCCAAGGTTTTAAAGATGCAGCTGAGGAAGCAGGAACATCTGTAACA
GGCGGCCAAACAGTACTAAACCCCTGGATTGTGCTGGGAGGAGTGGCTACCACTGTCTGCCAGCCCAATGAATTTATCAT
GCCAGACAATGCGGTGCCAGGGGACGTGCTGGTGTTGACGAAACCCCTGGGGACACAGGTGGCAGTGGCTGTGCACCAGT
GGCTGGATATTCCTGAGAAATGGAATAAGATTAAGCTAGTTGTCACCCAAGAAGATGTAGAGCTGGCCTACCAGGAGGCG
ATGATGAACATGGCGAGGCTCAACAGGACAGCTGCAGGACTCATGCACACATTCAACGCCCATGCGGCCACTGACATCAC
GGGCTTCGGGATTTTGGGCCACGCGCAGAACCTGGCCAAGCAGCAGAGAAACGAGGTGTCGTTCGTCATTCACAACCTGC
CGGTGCTGGCCAAGATGGCTGCAGTGAGCAAGGCCTGTGGAAACATGTTCGGCCTCATGCATGGGACCTGCCCGGAGACC
TCAGGCGGCCTCCTGATCTGTTTACCACGTGAGCAAGCAGCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATATGGTGA
AGGCCACCAAGCATGGATTATTGGGATTGTAGAGAAGGGCAACCGCACAGCCAGAATCATAGACAAACCCCGGATCATCG
AGGTCGCACCGCAAGTGGCCACTCAAAATGTGAATCCCACACCGGGGGCCACCTCTTAA

Library Parental gene expression (RPM)
SRP051959_colon 7 .65 RPM
SRP051959_heart 4 .63 RPM
SRP051959_kidney 6 .86 RPM
SRP051959_liver 9 .10 RPM
SRP051959_lung 6 .00 RPM
SRP051959_lymph_node 5 .52 RPM
SRP051959_skeletal_muscle 6 .51 RPM
SRP051959_spleen 6 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013555 possible_ortholog 1 retrogene
retro_amel_21,
Canis familiaris ENSCAFG00000004743 possible_ortholog 2 retrogenes
retro_cfam_1787, retro_cfam_250,
Dipodomys ordii ENSDORG00000014119 ortholog_one2many 1 retrogene
retro_dord_792,
Equus caballus ENSECAG00000014281 ortholog_one2many 1 retrogene
retro_ecab_77,
Felis catus ENSFCAG00000003921 possible_ortholog 1 retrogene
retro_fcat_96,
Homo sapiens ENSG00000086475 ortholog_one2many 3 retrogenes
retro_hsap_2196, retro_hsap_3860, retro_hsap_4705,
Gorilla gorilla ENSGGOG00000003806 possible_ortholog 2 retrogenes
retro_ggor_147, retro_ggor_2924,
Loxodonta africana ENSLAFG00000004670 possible_ortholog 1 retrogene
retro_lafr_125,
Macropus eugenii ENSMEUG00000012188 possible_ortholog 1 retrogene
retro_meug_245,
Myotis lucifugus ENSMLUG00000001971 possible_ortholog 2 retrogenes
retro_mluc_2350, retro_mluc_728,
Macaca mulatta ENSMMUG00000021233 ortholog_one2many 4 retrogenes
retro_mmul_1607, retro_mmul_2495, retro_mmul_2647, retro_mmul_922,
Monodelphis domestica ENSMODG00000016864 possible_ortholog 1 retrogene
retro_mdom_86,
Mustela putorius furo ENSMPUG00000000948 possible_ortholog 1 retrogene
retro_mputfur_20,
Mus musculus ENSMUSG00000026662 ortholog_one2many 1 retrogene
retro_mmus_248,
Nomascus leucogenys ENSNLEG00000012205 ortholog_many2many 7 retrogenes
retro_nleu_1868, retro_nleu_2211, retro_nleu_234, retro_nleu_2668, retro_nleu_2873, retro_nleu_3004, retro_nleu_327,
Otolemur garnettii ENSOGAG00000007807 ortholog_one2many 1 retrogene
retro_ogar_3026,
Ochotona princeps ENSOPRG00000006587 ortholog_one2many 3 retrogenes
retro_opri_271, retro_opri_655, retro_opri_670,
Procavia capensis ENSPCAG00000015617 possible_ortholog 1 retrogene
retro_pcap_341,
Pongo abelii ENSPPYG00000002099 possible_ortholog 6 retrogenes
retro_pabe_1324, retro_pabe_1378, retro_pabe_2074, retro_pabe_2620, retro_pabe_3047, retro_pabe_3652,
Pan troglodytes ENSPTRG00000002303 ortholog_one2many 3 retrogenes
retro_ptro_1135, retro_ptro_1669, retro_ptro_3126,
Pteropus vampyrus ENSPVAG00000002945 possible_ortholog 2 retrogenes
retro_pvam_115, retro_pvam_566,
Rattus norvegicus ENSRNOG00000018125 ortholog_many2many 1 retrogene
retro_rnor_59,
Tursiops truncatus ENSTTRG00000011114 possible_ortholog 1 retrogene
retro_ttru_649,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_166 96.08 65.05
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2. retro_cjac_2219 98.21 100.00
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Download FASTA sequences of all ENSCJAG00000009494 retrocopies