Parental gene:

SEPHS1, ENSG00000086475

Aliases:SEPHS1, SELD, SPS, SPS1
Description:selenophosphate synthetase 1 [Source:HGNC Symbol;Acc:19685]
Organism:Human (Homo sapiens)
Coordinates:10:13359423..13390297(-)


>ENSG00000086475
ATGTCTACGCGGGAGTCCTTTAACCCGGAAAGTTACGAATTGGACAAAAGCTTCCGGCTAACCAGATTCACTGAACTGAA
GGGCACAGGCTGCAAAGTGCCCCAAGATGTCCTGCAAAAATTGCTGGAATCTTTACAGGAGAACCACTTCCAAGAAGATG
AGCAGTTTCTGGGAGCCGTTATGCCAAGGCTTGGCATTGGAATGGATACTTGTGTCATTCCTTTGAGGCACGGTGGGCTT
TCCTTGGTTCAAACCACAGATTACATTTACCCGATCGTAGACGACCCTTACATGATGGGCAGGATAGCGTGTGCCAATGT
CCTCAGTGACCTCTATGCAATGGGGGTCACGGAATGTGACAATATGCTGATGCTCCTTGGAGTCAGTAATAAAATGACCG
ACAGGGAAAGGGATAAAGTGATGCCTCTGATTATCCAAGGTTTTAAAGACGCAGCTGAGGAAGCAGGAACATCTGTAACA
GGCGGCCAAACAGTACTAAACCCCTGGATTGTCCTGGGAGGAGTGGCTACCACTGTCTGCCAACCCAATGAATTTATCAT
GCCAGACAATGCAGTGCCAGGGGACGTGCTGGTGCTGACAAAACCCCTGGGGACACAGGTGGCAGTGGCTGTGCACCAGT
GGCTGGATATCCCTGAGAAATGGAATAAGATTAAACTAGTGGTCACCCAAGAAGATGTAGAGCTGGCCTACCAGGAGGCG
ATGATGAACATGGCGAGGCTCAACAGGACAGCTGCAGGACTCATGCACACGTTCAATGCCCACGCCGCCACTGACATCAC
GGGCTTCGGGATTTTGGGCCATGCGCAGAACCTGGCCAAGCAGCAGAGGAACGAGGTGTCGTTTGTAATTCACAACCTCC
CGGTGCTGGCCAAGATGGCTGCGGTGAGCAAGGCCTGCGGAAACATGTTCGGCCTCATGCACGGGACCTGCCCGGAGACT
TCAGGCGGCCTTCTGATCTGTTTACCACGTGAGCAAGCAGCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATATGGTGA
AGGCCACCAAGCATGGATTATTGGGATTGTAGAGAAGGGCAACCGCACAGCCAGAATCATAGACAAACCCCGGATCATCG
AGGTCGCACCACAAGTGGCCACTCAAAATGTGAATCCCACACCCGGGGCCACCTCTTAA

Library Parental gene expression (RPM)
bodymap2_adipose 28 .98 RPM
bodymap2_adrenal 46 .71 RPM
bodymap2_brain 23 .51 RPM
bodymap2_breast 37 .37 RPM
bodymap2_colon 34 .40 RPM
bodymap2_heart 25 .46 RPM
bodymap2_kidney 49 .49 RPM
bodymap2_liver 33 .16 RPM
bodymap2_lung 29 .13 RPM
bodymap2_lymph_node 43 .80 RPM
bodymap2_ovary 62 .23 RPM
bodymap2_prostate 39 .96 RPM
bodymap2_skeletal_muscle 25 .26 RPM
bodymap2_testis 54 .09 RPM
bodymap2_thyroid 68 .56 RPM
bodymap2_white_blood_cells 33 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009494 ortholog_one2many 2 retrogenes
retro_cjac_166, retro_cjac_2219,
Dipodomys ordii ENSDORG00000014119 ortholog_one2one 1 retrogene
retro_dord_792,
Equus caballus ENSECAG00000014281 ortholog_one2one 1 retrogene
retro_ecab_77,
Macaca mulatta ENSMMUG00000021233 ortholog_one2one 4 retrogenes
retro_mmul_1607, retro_mmul_2495, retro_mmul_2647, retro_mmul_922,
Mus musculus ENSMUSG00000026662 ortholog_one2one 1 retrogene
retro_mmus_248,
Nomascus leucogenys ENSNLEG00000012205 ortholog_one2one 7 retrogenes
retro_nleu_1868, retro_nleu_2211, retro_nleu_234, retro_nleu_2668, retro_nleu_2873, retro_nleu_3004, retro_nleu_327,
Otolemur garnettii ENSOGAG00000007807 ortholog_one2one 1 retrogene
retro_ogar_3026,
Pan troglodytes ENSPTRG00000002303 ortholog_one2one 3 retrogenes
retro_ptro_1135, retro_ptro_1669, retro_ptro_3126,
Rattus norvegicus ENSRNOG00000018125 ortholog_one2one 1 retrogene
retro_rnor_59,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2196 92.28 87.38
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2. retro_hsap_3860 91.60 77.88
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3. retro_hsap_4705 93.11 100.00
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Download FASTA sequences of all ENSG00000086475 retrocopies