Parental gene:

UBE2D4, ENSCJAG00000007875

Aliases:None
Description:ubiquitin-conjugating enzyme E2D 4 (putative) [Source:HGNC Symbol;Acc:21647]
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:11518235..11547915(+)


>ENSCJAG00000007875
AGGGTGATTGGTATGGTGGTTGGGGAGGAATTAACCGACTTGCAGAGGGATCCTCCTGCCCAGTGTTCTGCGGGACCGGT
AGGTGATGACTTGTTCCACTGGCAGGCCACCATCATGGGCCCGAATGACAGTCCTTACCAAGGAGGTGTTTTCTTCCTGA
CCATCCACTTTCCTACGGATTACCCATTCAAGCCCCCAAAGGTCGCTTTCACAACCAAAATTTATCACCCTAATATCAAC
AGCAATGGCAGCATCTGCCTCGATATCCTGCGGTCTCAGTGGTCTCCAGCGTTGACTGTGTCAAAAGTTCTCTTGTCCAT
CTGCTCACTGCTCTGCGACCCCAACCCCGATGACCCTCTGGTACCAGAGGTAGCTCACACCTACAAGGCCGACAGAGAGA
AGTACAACAGACTAGCAAGAGAGTGGACACAAAAATATGCTATGTAA

Library Parental gene expression (RPM)
SRP051959_colon 2 .13 RPM
SRP051959_heart 9 .98 RPM
SRP051959_kidney 9 .34 RPM
SRP051959_liver 6 .19 RPM
SRP051959_lung 5 .45 RPM
SRP051959_lymph_node 3 .68 RPM
SRP051959_skeletal_muscle 25 .16 RPM
SRP051959_spleen 4 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003997 ortholog_one2one 1 retrogene
retro_btau_1261,
Callithrix jacchus ENSCJAG00000011559 other_paralog 3 retrogenes
retro_cjac_3194, retro_cjac_3911, retro_cjac_3967,
Callithrix jacchus ENSCJAG00000015492 within_species_paralog 3 retrogenes
retro_cjac_512, retro_cjac_657, retro_cjac_791,
Callithrix jacchus ENSCJAG00000015818 within_species_paralog 9 retrogenes
retro_cjac_1813, retro_cjac_1815, retro_cjac_1998, retro_cjac_2073, retro_cjac_2511, retro_cjac_2576, retro_cjac_2856, retro_cjac_3174, retro_cjac_3296,
Dipodomys ordii ENSDORG00000006888 ortholog_one2one 5 retrogenes
retro_dord_104, retro_dord_345, retro_dord_408, retro_dord_743, retro_dord_760,
Homo sapiens ENSG00000078967 ortholog_one2one 2 retrogenes
retro_hsap_452, retro_hsap_453,
Gorilla gorilla ENSGGOG00000003378 ortholog_one2one 3 retrogenes
retro_ggor_1843, retro_ggor_2936, retro_ggor_436,
Myotis lucifugus ENSMLUG00000011919 ortholog_one2one 3 retrogenes
retro_mluc_1826, retro_mluc_1827, retro_mluc_594,
Macaca mulatta ENSMMUG00000002410 ortholog_one2one 5 retrogenes
retro_mmul_1067, retro_mmul_1937, retro_mmul_2514, retro_mmul_2515, retro_mmul_531,
Nomascus leucogenys ENSNLEG00000003364 ortholog_one2one 3 retrogenes
retro_nleu_54, retro_nleu_876, retro_nleu_90,
Oryctolagus cuniculus ENSOCUG00000008900 ortholog_one2one 1 retrogene
retro_ocun_1058,
Pongo abelii ENSPPYG00000029727 ortholog_one2one 1 retrogene
retro_pabe_3573,
Sus scrofa ENSSSCG00000016722 ortholog_one2one 2 retrogenes
retro_sscr_671, retro_sscr_79,
Tupaia belangeri ENSTBEG00000003691 ortholog_one2one 9 retrogenes
retro_tbel_1273, retro_tbel_2535, retro_tbel_2782, retro_tbel_307, retro_tbel_367, retro_tbel_37, retro_tbel_4118, retro_tbel_4163, retro_tbel_4312,
Tarsius syrichta ENSTSYG00000000595 ortholog_one2one 14 retrogenes
retro_tsyr_1007, retro_tsyr_1145, retro_tsyr_1162, retro_tsyr_1314, retro_tsyr_1392, retro_tsyr_1415, retro_tsyr_1677, retro_tsyr_1694, retro_tsyr_1859, retro_tsyr_683, retro_tsyr_789, retro_tsyr_836, retro_tsyr_838, retro_tsyr_919,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_925 63.57 83.78
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2. retro_cjac_1660 75.31 54.73
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3. retro_cjac_3666 74.07 55.10
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4. retro_cjac_3882 72.84 55.10
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Download FASTA sequences of all ENSCJAG00000007875 retrocopies