Parental gene:

UBE2D3, ENSCJAG00000015492

Aliases:None
Description:ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:90787063..90856850(+)


>ENSCJAG00000015492
GTATTAGGTATATTCAAATGCTTATCAGACGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCC
AGTTGGGGATGATATGTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGCGGTGTATTCTTTT
TGACAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGCAAGTGTTGCATTTACAACAAGAATTTATCATCCA
AATATTAACAGTAATGGCAGCATTTGTCTCGATATTCTAAGATCACAGTGGTCGCCTGCTTTAACAATTTCTAAAGTTCT
TTTATCCATTTGTTCACTGCTATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAG
ACAGAGATAAGTACAACAGAATATCTCGGGAATGGACTCAGAAGTATGCCATGTGA

Library Parental gene expression (RPM)
SRP051959_colon 93 .96 RPM
SRP051959_heart 92 .82 RPM
SRP051959_kidney 110 .47 RPM
SRP051959_liver 103 .21 RPM
SRP051959_lung 110 .18 RPM
SRP051959_lymph_node 125 .13 RPM
SRP051959_skeletal_muscle 114 .85 RPM
SRP051959_spleen 106 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004649 ortholog_one2one 2 retrogenes
retro_chof_2549, retro_chof_439,
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Callithrix jacchus ENSCJAG00000007875 within_species_paralog 4 retrogenes
retro_cjac_1660, retro_cjac_3666, retro_cjac_3882, retro_cjac_925,
Callithrix jacchus ENSCJAG00000011559 other_paralog 3 retrogenes
retro_cjac_3194, retro_cjac_3911, retro_cjac_3967,
Callithrix jacchus ENSCJAG00000015818 within_species_paralog 9 retrogenes
retro_cjac_1813, retro_cjac_1815, retro_cjac_1998, retro_cjac_2073, retro_cjac_2511, retro_cjac_2576, retro_cjac_2856, retro_cjac_3174, retro_cjac_3296,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Dipodomys ordii ENSDORG00000006762 ortholog_one2one 2 retrogenes
retro_dord_172, retro_dord_323,
Equus caballus ENSECAG00000020678 ortholog_one2one 1 retrogene
retro_ecab_859,
Erinaceus europaeus ENSEEUG00000014658 possible_ortholog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Gorilla gorilla ENSGGOG00000010832 ortholog_one2one 1 retrogene
retro_ggor_953,
Macropus eugenii ENSMEUG00000004256 ortholog_one2one 6 retrogenes
retro_meug_1034, retro_meug_1503, retro_meug_2138, retro_meug_564, retro_meug_787, retro_meug_89,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Pongo abelii ENSPPYG00000014967 possible_ortholog 1 retrogene
retro_pabe_91,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Sus scrofa ENSSSCG00000024306 ortholog_one2many 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 ortholog_one2many 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Ictidomys tridecemlineatus ENSSTOG00000013481 possible_ortholog 6 retrogenes
retro_itri_1222, retro_itri_1474, retro_itri_1628, retro_itri_463, retro_itri_672, retro_itri_998,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_512 56.52 76.87
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2. retro_cjac_657 51.01 95.30
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3. retro_cjac_791 63.11 82.99
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Download FASTA sequences of all ENSCJAG00000015492 retrocopies