Parental gene:

UBE2D3, ENSCHOG00000004649

Aliases:None
Description:ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_1855:1541..53271(-)


>ENSCHOG00000004649
GTGCTTTGTAACCGAAAATGCCTTTCAAAAGAACTTAGTGATTTGGCCCGTGACCCCCCAGCACAGTGTTCTGCAGGTCC
AGTTGGGGATGATATGTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGCGGTGTATTCTTTT
TGACAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACGACAAGAATTTATCATCCAAATATT
AACAGTAATGGCAGCATTTGTCTCGATATTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTACAACAGAATATCTCGGGAATGGACTCAGAAGTATGCCATGTGA

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001213 within_species_paralog 21 retrogenes
retro_chof_1091, retro_chof_1169, retro_chof_1465, retro_chof_1675, retro_chof_1731, retro_chof_2071, retro_chof_2089, retro_chof_2098, retro_chof_2101, retro_chof_2190, retro_chof_2266, retro_chof_2364, retro_chof_2481, retro_chof_2485, retro_chof_2514, retro_chof_2637, retro_chof_619, retro_chof_662, retro_chof_683, retro_chof_728, retro_chof_920,
Choloepus hoffmanni ENSCHOG00000001515 within_species_paralog 1 retrogene
retro_chof_1084,
Choloepus hoffmanni ENSCHOG00000007325 other_paralog 3 retrogenes
retro_chof_1756, retro_chof_2077, retro_chof_2358,
Choloepus hoffmanni ENSCHOG00000010341 other_paralog 2 retrogenes
retro_chof_1304, retro_chof_674,
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Callithrix jacchus ENSCJAG00000015492 ortholog_one2one 3 retrogenes
retro_cjac_512, retro_cjac_657, retro_cjac_791,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Dipodomys ordii ENSDORG00000006762 ortholog_one2one 2 retrogenes
retro_dord_172, retro_dord_323,
Equus caballus ENSECAG00000020678 ortholog_one2one 1 retrogene
retro_ecab_859,
Erinaceus europaeus ENSEEUG00000014658 possible_ortholog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Gorilla gorilla ENSGGOG00000010832 ortholog_one2one 1 retrogene
retro_ggor_953,
Macropus eugenii ENSMEUG00000004256 ortholog_one2one 6 retrogenes
retro_meug_1034, retro_meug_1503, retro_meug_2138, retro_meug_564, retro_meug_787, retro_meug_89,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Pongo abelii ENSPPYG00000014967 possible_ortholog 1 retrogene
retro_pabe_91,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Sus scrofa ENSSSCG00000024306 ortholog_one2many 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 ortholog_one2many 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_439 84.42 51.01
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2. retro_chof_2549 87.64 59.06
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Download FASTA sequences of all ENSCHOG00000004649 retrocopies