Parental gene:

UBE2D4, ENSPPYG00000029727

Aliases:None
Description:ubiquitin-conjugating enzyme E2D 4 (putative) [Source:HGNC Symbol;Acc:21647]
Organism:Orangutan (Pongo abelii)
Coordinates:7:40095919..40129231(-)


>ENSPPYG00000029727
ATGGCGCTAAAGCGGATCCAGAAGGAATTAACCGACTTGCAGAGGGATCCTCCTGCCCAGTGTTCCGCGGGACCTGTGGG
TGATGACTTGTTCCACTGGCAGGCCACCATCATGGGCCCGAATGACAGTCCTTACCAAGGAGGTGTTTTCTTCCTGACCA
TCCACTTTCCTACGGATTACCCGTTCAAGCCCCCAAAGGTTGCTTTCACAACCAAAATTTATCACCCTAATATCAACAGC
AATGGCAGCATCTGCCTTGATATCCTGCGGTCTCAGTGGTCTCCAGCGTTGACTGTGTCAAAAGTTCTCTTGTCCATCTG
CTCGCTGCTCTGCGACCCCAACCCCGATGACCCTCTGGTGCCAGAGATAGCCCACACCTACAAGGCCGACAGAGAGAAGT
ACAACAGACTAGCAAGAGAGTGGACACAAAAATATGCTATAACTCAGTGCCATCCTGGGTGCCCACGGCAGAGCAGGCTT
TCTTCGCACCTCATCTGCTGCAGAACCACATCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 23 .39 RPM
SRP007412_cerebellum 23 .96 RPM
SRP007412_heart 14 .12 RPM
SRP007412_kidney 18 .73 RPM
SRP007412_liver 13 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003997 ortholog_one2one 1 retrogene
retro_btau_1261,
Callithrix jacchus ENSCJAG00000007875 ortholog_one2one 4 retrogenes
retro_cjac_1660, retro_cjac_3666, retro_cjac_3882, retro_cjac_925,
Dipodomys ordii ENSDORG00000006888 ortholog_one2one 5 retrogenes
retro_dord_104, retro_dord_345, retro_dord_408, retro_dord_743, retro_dord_760,
Homo sapiens ENSG00000078967 ortholog_one2one 2 retrogenes
retro_hsap_452, retro_hsap_453,
Gorilla gorilla ENSGGOG00000003378 ortholog_one2one 3 retrogenes
retro_ggor_1843, retro_ggor_2936, retro_ggor_436,
Myotis lucifugus ENSMLUG00000011919 ortholog_one2one 3 retrogenes
retro_mluc_1826, retro_mluc_1827, retro_mluc_594,
Macaca mulatta ENSMMUG00000002410 ortholog_one2one 5 retrogenes
retro_mmul_1067, retro_mmul_1937, retro_mmul_2514, retro_mmul_2515, retro_mmul_531,
Nomascus leucogenys ENSNLEG00000003364 ortholog_one2one 3 retrogenes
retro_nleu_54, retro_nleu_876, retro_nleu_90,
Oryctolagus cuniculus ENSOCUG00000008900 ortholog_one2one 1 retrogene
retro_ocun_1058,
Pongo abelii ENSPPYG00000011602 within_species_paralog 1 retrogene
retro_pabe_99,
Pongo abelii ENSPPYG00000012987 other_paralog 1 retrogene
retro_pabe_3614,
Pongo abelii ENSPPYG00000014967 within_species_paralog 1 retrogene
retro_pabe_91,
Pongo abelii ENSPPYG00000015844 within_species_paralog 6 retrogenes
retro_pabe_1016, retro_pabe_1164, retro_pabe_1257, retro_pabe_2330, retro_pabe_30, retro_pabe_3670,
Sus scrofa ENSSSCG00000016722 ortholog_one2one 2 retrogenes
retro_sscr_671, retro_sscr_79,
Tupaia belangeri ENSTBEG00000003691 ortholog_one2one 9 retrogenes
retro_tbel_1273, retro_tbel_2535, retro_tbel_2782, retro_tbel_307, retro_tbel_367, retro_tbel_37, retro_tbel_4118, retro_tbel_4163, retro_tbel_4312,
Tarsius syrichta ENSTSYG00000000595 ortholog_one2one 14 retrogenes
retro_tsyr_1007, retro_tsyr_1145, retro_tsyr_1162, retro_tsyr_1314, retro_tsyr_1392, retro_tsyr_1415, retro_tsyr_1677, retro_tsyr_1694, retro_tsyr_1859, retro_tsyr_683, retro_tsyr_789, retro_tsyr_836, retro_tsyr_838, retro_tsyr_919,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3573 85.05 62.57
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000029727 retrocopies