Parental gene:

HDGF, ENSCJAG00000006157

Aliases:None
Description:hepatoma-derived growth factor [Source:HGNC Symbol;Acc:4856]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:10811058..10823643(-)


>ENSCJAG00000006157
ATGCACCCAAAAGGTGGCCAATTTGTGCCTCAACTCCTTGGCCATGTCCTGGCTACGAAACTCAAGCCTTTCCTCCTTAG
CAAAGGCAGACGTAGGGCTCAAATCCTCGACGTTTCCGGGGCCACCCCACATACGATTGACGAGATGCCCGAAGCTGCCG
TGAAATCAACAGCCAACAAATACCAAGTCTTTTTTTTCGGGACCCACGAGACGGCATTCCTGGGCCCCAAAGACCTCTTC
CCTTACGAGGAATCCAAGGAGAAGTTTGGCAAGCCCAACAAGAGGAAAGGGTTCAGCGAGGGGCTGTGGGAGATCGAGAA
CAACCCTACCGTCAAGGCTTCTGGCTATCAGTCCTCCCAGAAAAAGAGCTGCGTCGAAGAGCCTGAACCTGAGCCTGAAG
CCACAGAGGGCGACAGTGATAAGAAGGGGAATGCAGAGGGCAGCAGCGATGAGGAAGGGAAGCTGGTCATAGACGAGCCA
GCCAAGGAGAAGAACGAGAAGGGAGCCCTGAAGAGGAGAGCGGGGGACCTGCTGGAGGACTCTCCTAAACGTCCCAAGGA
GGCAGAAAACCCTGAAGAGGAGGAGAAGGAGGCAGCCACCTTGGAGGGTGAGAGGCCCCTTCCTGTGGAGGTGGAAAAAA
ATAGCACCCCCTCTGAGCCCGGCTCTGGCCGGGGGCCTCCCCAAGAGGAAGAAGAAGAGGAGGAAGAAGAGGAAGAGGCC
GCCAAGGAAGATGCTGAGGTCCCAGCCATCAGAGATCATGAGAGCCTATAA

Library Parental gene expression (RPM)
SRP051959_colon 60 .46 RPM
SRP051959_heart 26 .87 RPM
SRP051959_kidney 60 .72 RPM
SRP051959_liver 42 .84 RPM
SRP051959_lung 29 .12 RPM
SRP051959_lymph_node 21 .30 RPM
SRP051959_skeletal_muscle 41 .54 RPM
SRP051959_spleen 26 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039793 ortholog_one2one 1 retrogene
retro_btau_216,
Callithrix jacchus ENSCJAG00000012471 within_species_paralog 1 retrogene
retro_cjac_4069,
Callithrix jacchus ENSCJAG00000015775 within_species_paralog 1 retrogene
retro_cjac_4165,
Dasypus novemcinctus ENSDNOG00000010231 ortholog_one2many 1 retrogene
retro_dnov_4,
Equus caballus ENSECAG00000011178 ortholog_one2one 1 retrogene
retro_ecab_5,
Echinops telfairi ENSETEG00000005243 ortholog_one2one 1 retrogene
retro_etel_1899,
Homo sapiens ENSG00000143321 ortholog_one2one 1 retrogene
retro_hsap_33,
Myotis lucifugus ENSMLUG00000010413 ortholog_one2one 1 retrogene
retro_mluc_257,
Mus musculus ENSMUSG00000004897 ortholog_one2one 1 retrogene
retro_mmus_3647,
Pongo abelii ENSPPYG00000000703 ortholog_one2one 1 retrogene
retro_pabe_6,
Pan troglodytes ENSPTRG00000001474 ortholog_one2one 1 retrogene
retro_ptro_1,
Sus scrofa ENSSSCG00000006468 ortholog_one2one 1 retrogene
retro_sscr_65,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_338 64.23 53.52
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2. retro_cjac_4022 92.72 85.42
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Download FASTA sequences of all ENSCJAG00000006157 retrocopies