Parental gene:

HDGF, ENSSSCG00000006468

Aliases:None
Description:hepatoma-derived growth factor [Source:HGNC Symbol;Acc:4856]
Organism:Pig (Sus scrofa)
Coordinates:4:101912899..101923492(+)


>ENSSSCG00000006468
ATGTCGCGATCCAACCGGCAGAAGGAGTATAAATGCGGGGACCTGGTGTTCGCCAAGATGAAGGGCTACCCACACTGGCC
GGCCCGGATTGACGAGATGCCTGAGGCCGCCGTGAAATCCACAGCCAACAAATACCAAGTCTTTTTTTTCGGGACCCACG
AGACGGCATTCCTGGGCCCCAAAGACCTCTTCCCTTACGAGGAGTCCAAGGAGAAGTTTGGCAAGCCCAACAAGAGGAAA
GGGTTCAGCGAGGGGCTGTGGGAGATCGAGAACAACCCTACCGTCAAGGCTTCTGGCTACCAGTCCTCCCAGAAAAAGAG
CTGCGTGGAAGAGCCGGAGCCGAAGGCCGACGCCGCTGAGGGTGACGGCGATAAGAAGGGGAACGCAGAGGGCAGCAGCG
ACGAGGAAGGGAAGCTGGTCATCGACGAGCCGACCAAGGAGAAGAATGAGAAGGGGGCGCTGAAGAGGAGAGCAGGAGAC
CTGCTGGAGGACTCCCCCAAACGTCCCAAGGAGGCAGAAGACCCCGAAGGCGAGGAGAAGGAGGTGGCCACCTTGGAGGG
TGAAAGGCCCCTTCCAGTGGAGGCAGAGAAGAACAGCACCCCTTCTGAGCCCAGCTCTGGCCGGGGGCCTCCTCCGGAGG
AAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTACCAAGGAAGATGCTGAGGCCCCGGGCATCAGAGATCAT
GAGAGCCTGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 179 .45 RPM
SRP014902_testis 143 .00 RPM
SRP018288_heart 57 .91 RPM
SRP018288_kidney 130 .72 RPM
SRP018288_liver 124 .25 RPM
SRP018288_lung 166 .59 RPM
SRP018856_adipose 138 .25 RPM
SRP035408_brain 185 .83 RPM
SRP035408_liver 179 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039793 ortholog_one2one 1 retrogene
retro_btau_216,
Callithrix jacchus ENSCJAG00000006157 ortholog_one2one 2 retrogenes
retro_cjac_338, retro_cjac_4022,
Dasypus novemcinctus ENSDNOG00000010231 ortholog_one2many 1 retrogene
retro_dnov_4,
Equus caballus ENSECAG00000011178 ortholog_one2one 1 retrogene
retro_ecab_5,
Echinops telfairi ENSETEG00000005243 ortholog_one2one 1 retrogene
retro_etel_1899,
Homo sapiens ENSG00000143321 ortholog_one2one 1 retrogene
retro_hsap_33,
Myotis lucifugus ENSMLUG00000010413 ortholog_one2one 1 retrogene
retro_mluc_257,
Mus musculus ENSMUSG00000004897 ortholog_one2one 1 retrogene
retro_mmus_3647,
Pongo abelii ENSPPYG00000000703 ortholog_one2one 1 retrogene
retro_pabe_6,
Pan troglodytes ENSPTRG00000001474 ortholog_one2one 1 retrogene
retro_ptro_1,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_65 57.98 76.54
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Download FASTA sequences of all ENSSSCG00000006468 retrocopies