Parental gene:

AMD1, ENSCJAG00000005257

Aliases:None
Description:adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:457]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:110450681..110554357(+)


>ENSCJAG00000005257
ATGGAAGCTGCACATTTTTTCGAAGGGACCGAGAAGCTGCTGGAGGTTTGGTTCTCCCGGCAGCAGCCCGACGCAAACCA
AGGATCTGGGGATCTTCGCACTATCCCAAGATCTGAGTGGGACATACTTTTGAAGGATGTGCAATGTTCAATCATAAGTG
TGACAAAAACTGACAAGCAGGAAGCTTATGTACTCAGTGAGAGTAGCATGTTTGTCTCCAAGAGACGTTTCATTTTGAAG
ACATGTGGTACCACCCTCTTGCTGAAAGCACTGGTTCCCCTGTTGAAGCTTGCTAGGGATTACAGTGGGTTTGACTCAAT
TCAAAGCTTCTTTTATTCTCGTAAGAATTTCATGAAGCCTTCTCACCAAGGGTACCCACACCGGAATTTCCAGGAAGAAA
TAGAGTTTCTTAATGCAATTTTCCCAAATGGAGCAGCATATTGTATGGGACGTATGAATTCTGACTGTTGGTACTTATAT
ACTCTGGATTTCCCAGAGAGTCGGGTAATCAGTCAGCCAGATCAAACTTTGGAAATTCTGATGAGTGAGCTTGACCCAGC
AGTTATGGACCAGTTCTACATGAAAGATGGTGTTACTGCAAAGGATGTCACTCGTGAGAGTGGAATTCGTGACCTGATAC
CAGGTTCTGTCATTGATGCCACAATGTTCAATCCTTGCGGGTATTCAATGAATGGAATGAAATCGGATGGAACTTACTGG
ACTATTCACATCACTCCAGAACCAGAATTTTCTTATGTTAGCTTTGAAACAAACTTAAGTCAGACCTCTTATGATGACCT
GATCAGGAAAGTTGTAGAAGTCTTCAAACCAGGAAAATTTGTGACCACCTTGTTTGTTAATCAGAGTTCTAAATGTCGCA
CAGTGCTTTCTTCGCCCCAGAAGATTGAAGGTTTTAAGCGTCTTGATTGCCAGAGTGCTATGTTCAATGATTACAATTTT
GTTTTTACCAGTTTTGCTAAGAAGCAGCAACAACAGCAGAGTTGA

Library Parental gene expression (RPM)
SRP051959_colon 47 .13 RPM
SRP051959_heart 29 .59 RPM
SRP051959_kidney 56 .89 RPM
SRP051959_liver 25 .36 RPM
SRP051959_lung 32 .36 RPM
SRP051959_lymph_node 45 .87 RPM
SRP051959_skeletal_muscle 18 .91 RPM
SRP051959_spleen 37 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003500 ortholog_one2one 1 retrogene
retro_amel_797,
Bos taurus ENSBTAG00000003342 ortholog_one2one 1 retrogene
retro_btau_1545,
Canis familiaris ENSCAFG00000003905 ortholog_one2one 2 retrogenes
retro_cfam_1526, retro_cfam_2056,
Choloepus hoffmanni ENSCHOG00000009171 ortholog_one2one 9 retrogenes
retro_chof_1327, retro_chof_2200, retro_chof_238, retro_chof_2691, retro_chof_332, retro_chof_425, retro_chof_628, retro_chof_74, retro_chof_968,
Dasypus novemcinctus ENSDNOG00000006867 ortholog_one2one 10 retrogenes
retro_dnov_1736, retro_dnov_1796, retro_dnov_185, retro_dnov_2436, retro_dnov_2653, retro_dnov_315, retro_dnov_357, retro_dnov_63, retro_dnov_752, retro_dnov_770,
Equus caballus ENSECAG00000011198 ortholog_one2many 4 retrogenes
retro_ecab_1110, retro_ecab_173, retro_ecab_57, retro_ecab_681,
Felis catus ENSFCAG00000028033 ortholog_one2one 1 retrogene
retro_fcat_1175,
Homo sapiens ENSG00000123505 ortholog_one2one 5 retrogenes
retro_hsap_3315, retro_hsap_3630, retro_hsap_3922, retro_hsap_4917, retro_hsap_547,
Gorilla gorilla ENSGGOG00000006466 ortholog_one2one 5 retrogenes
retro_ggor_1304, retro_ggor_2448, retro_ggor_2640, retro_ggor_3070, retro_ggor_498,
Loxodonta africana ENSLAFG00000013203 possible_ortholog 2 retrogenes
retro_lafr_1040, retro_lafr_770,
Macropus eugenii ENSMEUG00000010630 ortholog_one2one 1 retrogene
retro_meug_1558,
Myotis lucifugus ENSMLUG00000005666 ortholog_one2one 4 retrogenes
retro_mluc_1675, retro_mluc_1687, retro_mluc_2625, retro_mluc_538,
Macaca mulatta ENSMMUG00000000535 ortholog_one2one 6 retrogenes
retro_mmul_1606, retro_mmul_1742, retro_mmul_1841, retro_mmul_2076, retro_mmul_2383, retro_mmul_2648,
Mus musculus ENSMUSG00000075232 ortholog_one2many 1 retrogene
retro_mmus_47,
Nomascus leucogenys ENSNLEG00000012818 ortholog_one2one 4 retrogenes
retro_nleu_2758, retro_nleu_2983, retro_nleu_720, retro_nleu_812,
Otolemur garnettii ENSOGAG00000030150 possible_ortholog 7 retrogenes
retro_ogar_1108, retro_ogar_1152, retro_ogar_1608, retro_ogar_1962, retro_ogar_3163, retro_ogar_354, retro_ogar_366,
Pongo abelii ENSPPYG00000016924 ortholog_one2one 4 retrogenes
retro_pabe_2977, retro_pabe_3194, retro_pabe_3826, retro_pabe_505,
Pan troglodytes ENSPTRG00000018501 ortholog_one2one 5 retrogenes
retro_ptro_2157, retro_ptro_2453, retro_ptro_2667, retro_ptro_3280, retro_ptro_411,
Rattus norvegicus ENSRNOG00000000585 ortholog_one2many 1 retrogene
retro_rnor_1050,
Sorex araneus ENSSARG00000014387 ortholog_one2one 3 retrogenes
retro_sara_274, retro_sara_614, retro_sara_760,
Sus scrofa ENSSSCG00000004392 ortholog_one2one 1 retrogene
retro_sscr_1042,
Ictidomys tridecemlineatus ENSSTOG00000000205 ortholog_one2one 4 retrogenes
retro_itri_1402, retro_itri_1859, retro_itri_598, retro_itri_943,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_631 99.10 100.00
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2. retro_cjac_850 96.72 100.00
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3. retro_cjac_1600 93.89 68.56
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4. retro_cjac_1738 92.54 100.00
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5. retro_cjac_2452 60.61 73.21
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6. retro_cjac_3020 100.00 100.00
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Download FASTA sequences of all ENSCJAG00000005257 retrocopies