Parental gene:

PRDX2, ENSCJAG00000004882

Aliases:None
Description:peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:12000696..12005265(-)


>ENSCJAG00000004882
ATGGCCTCCGGTAACGCGCACATCGGAAAGCCTGCCCCTGACTTCAAGGCCACAGCCGTGGTGGATGGCGCCTTCAAAGA
AGTGAAGCTATCGGACTACAAAGGGAAGTACGTGGTCCTCTTTTTCTACCCTCTGGACTTCACTTTTGTGTGCCCCACGG
AGATCATAGCGTTCAGCAACCGTGCCGAGGACTTCCGCAAGCTGGGCTGTGAAGTGCTGGGCGTCTCCGTGGACTCTCAG
TTCACCCACCTGGCTTGGATCAACACCCCCCGGAAAGAGGGAGGCTTGGGCCCCCTGAACATCCCCCTGCTTGCTGATGT
GACCAGACGCTTGTCTGAGGATTATGGCGTGCTGAAAACAGATGAGGGCATTGCCTACAGGGGTCTCTTTGTCATCGATG
GCAAGGGTGTCCTTCGCCAGATCACTGTTAATGATTTGCCTGTGGGACGCTCCGTGGATGAGGCTCTTCGATTGGTCCAG
GCCTTCCAGTACACGGACGAGCATGGGGAAGTTTGTCCCGCTGGCTGGAAGCCTGGCAGTGACACGATTAAGCCCAACGT
GGATGACAGCAAGGAATATTTCTCCAAACACAATTAG

Library Parental gene expression (RPM)
SRP051959_colon 21 .26 RPM
SRP051959_heart 36 .59 RPM
SRP051959_kidney 32 .39 RPM
SRP051959_liver 13 .56 RPM
SRP051959_lung 11 .16 RPM
SRP051959_lymph_node 1 .85 RPM
SRP051959_skeletal_muscle 40 .99 RPM
SRP051959_spleen 12 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012307 ortholog_one2many 3 retrogenes
retro_amel_1188, retro_amel_1710, retro_amel_55,
Canis familiaris ENSCAFG00000017163 ortholog_one2one 3 retrogenes
retro_cfam_1603, retro_cfam_1624, retro_cfam_1739,
Ciona intestinalis ENSCING00000003002 ortholog_one2many 1 retrogene
retro_cint_8,
Callithrix jacchus ENSCJAG00000004807 within_species_paralog 2 retrogenes
retro_cjac_1201, retro_cjac_2884,
Callithrix jacchus ENSCJAG00000019636 within_species_paralog 3 retrogenes
retro_cjac_1333, retro_cjac_3082, retro_cjac_653,
Dipodomys ordii ENSDORG00000009005 ortholog_one2one 1 retrogene
retro_dord_176,
Felis catus ENSFCAG00000000473 ortholog_one2one 1 retrogene
retro_fcat_1755,
Homo sapiens ENSG00000167815 ortholog_one2one 3 retrogenes
retro_hsap_1184, retro_hsap_3278, retro_hsap_3500,
Gorilla gorilla ENSGGOG00000025089 ortholog_one2many 3 retrogenes
retro_ggor_2366, retro_ggor_2833, retro_ggor_923,
Macaca mulatta ENSMMUG00000005689 ortholog_one2many 2 retrogenes
retro_mmul_1780, retro_mmul_2061,
Monodelphis domestica ENSMODG00000006978 ortholog_one2one 1 retrogene
retro_mdom_1770,
Mustela putorius furo ENSMPUG00000004591 ortholog_one2one 2 retrogenes
retro_mputfur_28, retro_mputfur_660,
Mus musculus ENSMUSG00000005161 ortholog_one2many 2 retrogenes
retro_mmus_2403, retro_mmus_472,
Nomascus leucogenys ENSNLEG00000012800 ortholog_one2one 2 retrogenes
retro_nleu_2110, retro_nleu_2883,
Otolemur garnettii ENSOGAG00000024998 ortholog_one2many 2 retrogenes
retro_ogar_1993, retro_ogar_244,
Pongo abelii ENSPPYG00000009607 ortholog_one2one 3 retrogenes
retro_pabe_2711, retro_pabe_2892, retro_pabe_988,
Pan troglodytes ENSPTRG00000010541 ortholog_one2one 3 retrogenes
retro_ptro_2217, retro_ptro_2372, retro_ptro_812,
Rattus norvegicus ENSRNOG00000003520 ortholog_one2one 2 retrogenes
retro_rnor_2288, retro_rnor_497,
Sorex araneus ENSSARG00000000146 ortholog_one2one 1 retrogene
retro_sara_96,
Sarcophilus harrisii ENSSHAG00000015596 ortholog_one2one 1 retrogene
retro_shar_305,
Sus scrofa ENSSSCG00000013736 ortholog_one2one 2 retrogenes
retro_sscr_155, retro_sscr_962,
Ictidomys tridecemlineatus ENSSTOG00000025862 ortholog_one2one 1 retrogene
retro_itri_842,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1269 95.33 54.04
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2. retro_cjac_1795 69.78 90.82
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3. retro_cjac_2356 75.88 100.00
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4. retro_cjac_2392 76.80 96.46
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Download FASTA sequences of all ENSCJAG00000004882 retrocopies