Parental gene:

PRDX3, ENSCJAG00000019636

Aliases:None
Description:peroxiredoxin 3 [Source:HGNC Symbol;Acc:9354]
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:106961982..106971922(-)


>ENSCJAG00000019636
ATGGCGGCTGCTGTGCGAAGGTTGCTTCGGTCGTCGGTTGCCCGACATGTGAGTTCCCTTCCTTGGGGCATTTCTGCCAC
TGCAGCCCTCAGGCCTGCTGTATGTGGAAGAACGAGCTTGACAAACATATTGTGTTCTGGTTCCGGTCAAGCAAAATTCT
TCAGCAGTAGTTCCTCATACCATGCCCCTGCTGTCACCCAGCATGCGCCCTATTTTAAGGGAACAGCCGTTGTCAATGGA
GAGTTCAAAGACCTAAGCCTTGATGACTTTAAGGGGAAATATTTGGTGCTTTTCTTCTATCCTTTGGATTTCACCTTTGT
GTGTCCTACAGAAATTATTGCTTTTAGTGACAAAGTTAACGAATTTCACGACGTGAACTGTGAAGTTGTTGCAGTCTCAG
TGGATTCCCACTTTAGCCATCTTGCCTGGATAAATACACCAAGAAAGAATGGTGGTTTGGGCCACATGAACATCGCACTC
TTGTCAGATTTAACTAAGCAAATTTCCCGAGACTACGGTGTGCTGTTAGAAGGTCCTGGTCTTGCACTAAGAGGTCTCTT
CATAATTGACCCCAATGGAGTCATCAAGCACTTGAGTGTCAATGATCTCCCAGTGGGCCGAAGCGTGGAAGAAACCCTCC
GCCTGGTGAAGGCATTCCAGTATGTAGAAACCCATGGAGAAGTCTGCCCAGCGAACTGGACACCGGATTCTCCTACAATC
AAGCCAAGTCCAGATGCTTCCAAAGAGTACTTTCAGAAGGTAAATCAGTAG

Library Parental gene expression (RPM)
SRP051959_colon 36 .85 RPM
SRP051959_heart 55 .83 RPM
SRP051959_kidney 83 .46 RPM
SRP051959_liver 121 .08 RPM
SRP051959_lung 23 .59 RPM
SRP051959_lymph_node 25 .59 RPM
SRP051959_skeletal_muscle 74 .97 RPM
SRP051959_spleen 34 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000008731 ortholog_one2one 1 retrogene
retro_btau_562,
Canis familiaris ENSCAFG00000012109 ortholog_one2many 3 retrogenes
retro_cfam_1322, retro_cfam_219, retro_cfam_9,
Callithrix jacchus ENSCJAG00000004807 within_species_paralog 2 retrogenes
retro_cjac_1201, retro_cjac_2884,
Callithrix jacchus ENSCJAG00000004882 within_species_paralog 4 retrogenes
retro_cjac_1269, retro_cjac_1795, retro_cjac_2356, retro_cjac_2392,
Ciona savignyi ENSCSAVG00000001209 ortholog_one2one 1 retrogene
retro_csav_6,
Dasypus novemcinctus ENSDNOG00000001359 ortholog_one2one 3 retrogenes
retro_dnov_1052, retro_dnov_2373, retro_dnov_745,
Equus caballus ENSECAG00000017026 ortholog_one2one 1 retrogene
retro_ecab_408,
Erinaceus europaeus ENSEEUG00000009299 ortholog_one2one 1 retrogene
retro_eeur_238,
Homo sapiens ENSG00000165672 ortholog_one2one 3 retrogenes
retro_hsap_1253, retro_hsap_2587, retro_hsap_2653,
Gorilla gorilla ENSGGOG00000026364 ortholog_one2one 1 retrogene
retro_ggor_986,
Macropus eugenii ENSMEUG00000007732 ortholog_one2one 3 retrogenes
retro_meug_1219, retro_meug_1735, retro_meug_62,
Microcebus murinus ENSMICG00000007627 ortholog_one2one 1 retrogene
retro_mmur_475,
Myotis lucifugus ENSMLUG00000012871 ortholog_one2one 3 retrogenes
retro_mluc_1203, retro_mluc_1522, retro_mluc_2069,
Macaca mulatta ENSMMUG00000008294 ortholog_one2one 2 retrogenes
retro_mmul_1307, retro_mmul_1517,
Monodelphis domestica ENSMODG00000009286 ortholog_one2one 1 retrogene
retro_mdom_1062,
Mustela putorius furo ENSMPUG00000003074 ortholog_one2one 1 retrogene
retro_mputfur_1032,
Nomascus leucogenys ENSNLEG00000016698 ortholog_one2one 3 retrogenes
retro_nleu_1521, retro_nleu_2118, retro_nleu_2453,
Oryctolagus cuniculus ENSOCUG00000017334 ortholog_one2many 2 retrogenes
retro_ocun_135, retro_ocun_1434,
Pongo abelii ENSPPYG00000002700 ortholog_one2one 1 retrogene
retro_pabe_1906,
Pan troglodytes ENSPTRG00000002992 ortholog_one2many 1 retrogene
retro_ptro_29,
Ictidomys tridecemlineatus ENSSTOG00000002537 ortholog_one2one 2 retrogenes
retro_itri_1098, retro_itri_1753,
Tupaia belangeri ENSTBEG00000011064 ortholog_one2one 5 retrogenes
retro_tbel_3138, retro_tbel_3994, retro_tbel_710, retro_tbel_770, retro_tbel_811,
Tursiops truncatus ENSTTRG00000010878 ortholog_one2one 2 retrogenes
retro_ttru_1703, retro_ttru_881,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_653 81.43 54.30
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2. retro_cjac_1333 73.02 72.27
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3. retro_cjac_3082 73.66 78.12
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Download FASTA sequences of all ENSCJAG00000019636 retrocopies