Parental gene: | NME1, ENSCAFG00000023628 |
| Aliases: | NME1, NM23-C1, NM23A |
| Description: | Canis lupus familiaris non-metastatic cells 1, protein (NM23A) expressed in (NME1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024637] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 9:26991597..27005600(+) |
>ENSCAFG00000023628
ATGGCCAACAGTGAACGCACCTTCATTGCCATCAAGCCTGATGGAGTCCAGCGCAGCCTTGTGGGAGAGATCATCAAGCG
TTTCGAGCAAAAGGGATTCCGCCTCATTGCTATGAAATTAATCCAGGCTTCTGAAGACCTTCTCAAGGAGCACTATATTG
ACCTGAAGGACCGTCCATTCTTTGCCGGCCTGGTGAAGTACATGCAGTCAGGGCCTGTGGTTGCCATGGTGTGGGAGGGC
CTGAATGTGGTGAAGACAGGCCGAGTGATGCTCGGGGAGACCAACCCGGCGGACTCCAAACCTGGGACCATCCGTGGGGA
CTTTTGCATCCAAGTTGGCAGGAACATTATCCATGGCAGCGATTCTGTGGAGAGTGCGGAGAAGGAGATTGGCTTGTGGT
TCCAGCCTGAAGAGCTGGTGGATTACAAGAGCTGTGCTCAGAACTGGATTTATGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 94 .92 RPM |
| SRP017611_brain | 88 .05 RPM |
| SRP017611_kidney | 357 .59 RPM |
| SRP017611_liver | 60 .11 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000004651 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000019677 | within_species_paralog | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000008413 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000005563 | possible_ortholog | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000016526 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000028492 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000015559 | ortholog_one2many | 5 retrogenes | |
| Mus musculus | ENSMUSG00000091228 | possible_ortholog | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000007919 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000022135 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009415 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000002693 | ortholog_one2many | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_37 | 88.82 | 100.00 | Please wait, loading  |
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| 2. | retro_cfam_69 | 91.72 | 95.39 | Please wait, loading |
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| 3. | retro_cfam_96 | 94.74 | 100.00 | Please wait, loading |
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| 4. | retro_cfam_117 | 95.39 | 100.00 | Please wait, loading |
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| 5. | retro_cfam_676 | 53.12 | 52.74 | Please wait, loading |
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| 6. | retro_cfam_832 | 72.73 | 65.13 | Please wait, loading |
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| 7. | retro_cfam_1645 | 70.27 | 96.71 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000023628 retrocopies