Parental gene:

NME1, ENSOCUG00000022135

Aliases:None
Description:NME/NM23 nucleoside diphosphate kinase 1 (NME1), mRNA [Source:RefSeq mRNA;Acc:NM_001204749]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:19:36653453..36660883(-)


>ENSOCUG00000022135
ACCATGGCCAACACCGAGCGCACCTTCATTGCCATCAAGCCCGACGGGGTTCAGCGGGGGCTTGTGGGAGAGATCATCAA
ACGTTTTGAGCAGAAGGGCTTCCGCCTCGTTAGTCTGAAATTAATGCAGGCGTCTGAAGACCTCCTCAGGGAACACTACA
TCGACCTGAAGGACCGTCCGTTCTTTCCCGGCCTGGTGAAATACATGCACTCGGGGCCCGTGGTCGCCATGGTCTGGGAG
GGGCTGAATGTGGTGAAGACAGGCCGAGTGATGCTCGGGGAGACTAACCCTGCGGACTCCAAGCCGGGCACCATCCGCGG
GGACTTGTGCGTCCAGGTTGGCAGGAACATCATTCATGGCAGCGATTCCGTGGAGAGTGCAGAGAAGGAGATCAGCCTGT
GGTTTCAGCCCGAGGAACTAGTGGATTACAAGAGTTGTGCTCAGGACTGGATCTACGAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 56 .40 RPM
SRP017611_kidney 18 .24 RPM
SRP017611_liver 6 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004651 ortholog_one2one 1 retrogene
retro_btau_1707,
Canis familiaris ENSCAFG00000023628 ortholog_one2many 7 retrogenes
retro_cfam_117, retro_cfam_1645, retro_cfam_37, retro_cfam_676, retro_cfam_69, retro_cfam_832, retro_cfam_96,
Gorilla gorilla ENSGGOG00000016526 ortholog_one2one 1 retrogene
retro_ggor_71,
Monodelphis domestica ENSMODG00000028492 ortholog_one2one 1 retrogene
retro_mdom_503,
Mustela putorius furo ENSMPUG00000015559 ortholog_one2one 5 retrogenes
retro_mputfur_1093, retro_mputfur_1357, retro_mputfur_442, retro_mputfur_667, retro_mputfur_997,
Mus musculus ENSMUSG00000091228 possible_ortholog 3 retrogenes
retro_mmus_2712, retro_mmus_3081, retro_mmus_581,
Nomascus leucogenys ENSNLEG00000007919 ortholog_one2one 2 retrogenes
retro_nleu_1029, retro_nleu_1030,
Oryctolagus cuniculus ENSOCUG00000024946 within_species_paralog 1 retrogene
retro_ocun_418,
Pan troglodytes ENSPTRG00000009415 ortholog_one2one 1 retrogene
retro_ptro_91,
Rattus norvegicus ENSRNOG00000002693 ortholog_one2one 3 retrogenes
retro_rnor_1198, retro_rnor_1600, retro_rnor_704,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1728 63.33 58.17
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Download FASTA sequences of all ENSOCUG00000022135 retrocopies