Parental gene:

RBMX, ENSCAFG00000018962

Aliases:None
Description:RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910]
Organism:Dog (Canis familiaris)
Coordinates:X:107177490..107181116(-)


>ENSCAFG00000018962
AAAATGGTTGAAGCAGATCGCCCAGGAAAGCTTTTCATTGGTGGCCTCAATACGGAAACAAATGAAAAAGCCCTTGAAGC
AGTATTTGGCAAATATGGACGAATAGTGGAAGTTCTATTGATGAAAGATCGTGAAACCAACAAATCAAGAGGATTTGCTT
TTGTCACCTTTGAGAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCCTTAGATGGAAAAGCCATC
AAGGTAGAACAAGCCACAAAACCATCATTTGAAAGTGGTAGACGTGGACCACCTCCACCTCCAAGAAGCAGAGGCCCTCC
AAGAGGTCTTAGAGGCGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCTTCACGTGGAGGGCACATGGATGATGGTG
GCTATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTTCCAGTAAAAAGAGGACCACCACCACGAAGTGGTGGT
CCTCCTCCTAAAAGATCTGCCCCTTCAGGACCAGTTCGCAGCAGCAGTGGAATGGGAGGAAGAGCTCCTGTGTCACGCGG
AAGAGATAGTTATGGAGGCCCACCTCGAAGGGAACCCCTGCCCTCTCGTAGAGATGTGTATTTGTCCCCAAGAGATGATG
GATATTCTACTAAAGACAGCTATTCAAGCAGAGATTACCCAAGTTCTCGTGATACAAGAGATTATGCACCACCACCAAGA
GATTATACTTACCGTGATTATGGTCATTCCAGTTCACGTGATGACTACCCATCAAGAGGCTATAGTGATAGAGATGGCTA
TGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGTAACTCACGTA
GTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGA
TATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGA
AAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAA
GAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATATTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 44 .98 RPM
SRP017611_brain 22 .79 RPM
SRP017611_kidney 29 .06 RPM
SRP017611_liver 15 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000013308 possible_ortholog 1 retrogene
retro_btau_36,
Canis familiaris ENSCAFG00000013345 within_species_paralog 2 retrogenes
retro_cfam_1971, retro_cfam_966,
Canis familiaris ENSCAFG00000015485 within_species_paralog 2 retrogenes
retro_cfam_1475, retro_cfam_259,
Choloepus hoffmanni ENSCHOG00000012369 possible_ortholog 3 retrogenes
retro_chof_1240, retro_chof_2596, retro_chof_880,
Cavia porcellus ENSCPOG00000012164 possible_ortholog 1 retrogene
retro_cpor_778,
Dasypus novemcinctus ENSDNOG00000017199 possible_ortholog 3 retrogenes
retro_dnov_1436, retro_dnov_2205, retro_dnov_696,
Dipodomys ordii ENSDORG00000015481 possible_ortholog 1 retrogene
retro_dord_793,
Echinops telfairi ENSETEG00000013178 possible_ortholog 1 retrogene
retro_etel_1952,
Felis catus ENSFCAG00000004779 ortholog_one2one 1 retrogene
retro_fcat_1903,
Homo sapiens ENSG00000147274 ortholog_one2one 7 retrogenes
retro_hsap_23, retro_hsap_3074, retro_hsap_3587, retro_hsap_4144, retro_hsap_4846, retro_hsap_800, retro_hsap_91,
Gorilla gorilla ENSGGOG00000006944 possible_ortholog 1 retrogene
retro_ggor_657,
Loxodonta africana ENSLAFG00000005568 possible_ortholog 3 retrogenes
retro_lafr_1188, retro_lafr_276, retro_lafr_35,
Microcebus murinus ENSMICG00000006856 ortholog_one2one 2 retrogenes
retro_mmur_1252, retro_mmur_661,
Myotis lucifugus ENSMLUG00000013209 possible_ortholog 5 retrogenes
retro_mluc_1630, retro_mluc_1746, retro_mluc_203, retro_mluc_2180, retro_mluc_80,
Monodelphis domestica ENSMODG00000014054 possible_ortholog 1 retrogene
retro_mdom_1231,
Mustela putorius furo ENSMPUG00000001855 ortholog_one2one 2 retrogenes
retro_mputfur_1539, retro_mputfur_956,
Mus musculus ENSMUSG00000031134 possible_ortholog 2 retrogenes
retro_mmus_170, retro_mmus_187,
Oryctolagus cuniculus ENSOCUG00000007220 possible_ortholog 1 retrogene
retro_ocun_3,
Otolemur garnettii ENSOGAG00000007839 possible_ortholog 5 retrogenes
retro_ogar_1057, retro_ogar_137, retro_ogar_1586, retro_ogar_2445, retro_ogar_2584,
Ochotona princeps ENSOPRG00000016593 possible_ortholog 1 retrogene
retro_opri_372,
Pongo abelii ENSPPYG00000020771 ortholog_one2one 3 retrogenes
retro_pabe_2548, retro_pabe_303, retro_pabe_766,
Rattus norvegicus ENSRNOG00000000866 ortholog_one2one 1 retrogene
retro_rnor_268,
Sorex araneus ENSSARG00000000397 possible_ortholog 1 retrogene
retro_sara_169,
Ictidomys tridecemlineatus ENSSTOG00000006211 ortholog_one2one 2 retrogenes
retro_itri_1205, retro_itri_1346,
Tupaia belangeri ENSTBEG00000001154 possible_ortholog 1 retrogene
retro_tbel_1919,
Tarsius syrichta ENSTSYG00000009555 possible_ortholog 1 retrogene
retro_tsyr_15,
Tursiops truncatus ENSTTRG00000007322 ortholog_one2one 1 retrogene
retro_ttru_1450,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1106 94.67 100.00
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2. retro_cfam_1244 83.93 84.44
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3. retro_cfam_1649 80.83 85.46
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4. retro_cfam_1914 97.19 100.00
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Download FASTA sequences of all ENSCAFG00000018962 retrocopies