Parental gene:

ENSCAFG00000016151

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:27:45223179..45249185(-)


>ENSCAFG00000016151
ATGGCCCTCAGCGATGCCGACGTGCAGAAGCAGATTAAGCATATGATGGCTTTTATTGAACAAGAAGCCAACGAGAAAGC
AGAGGAAATAGATGCGAAGGCAGAGGAAGAGTTCAACATTGAGAAAGGTCGTCTTGTGCAAACCCAAAGACTGAAGATTA
TGGAATACTATGAGAAGAAAGAAAAGCAGATTGAGCAGCAGAAGAAAATTCAGATGTCTAATTTGATGAATCAAGCAAGG
CTCAAAGTCCTCAGAGCAAGAGATGACCTTATTACAGACCTACTAAATGAAGCAAAACAGAGACTCAGCAAAGTGGTAAA
AGATACAACCAGGTACCAAGTGCTGCTGGATGGACTGGTCCTCCAGGGTTTGTACCAATTGTTGGAGCCCCGAATGATTG
TTCGTTGCAGGAAACAGGATTTCCCTCTGGTAAAGGCTGCAGTGCAAAAAGCAATTCCTATGTATAAAATTGCCACCAAA
AAAGATGTTGATGTCCAAATTGATCAGGAATCCTACCTGCCTGAGGAAATAGCTGGTGGAGTGGAGATCTATAATGGGGA
TCGTAAAATAAAGGTTTCCAATACTCTAGAAAGCCGGCTGGACCTCATAGCCCAGCAGATGATGCCAGAAGTACGGGGAG
CCTTATTTGGTGCAAATGCCAACAGGAAGTTTTTGGACTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 164 .76 RPM
SRP017611_brain 146 .32 RPM
SRP017611_kidney 168 .79 RPM
SRP017611_liver 24 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017489 ortholog_one2many 2 retrogenes
retro_amel_116, retro_amel_1502,
Bos taurus ENSBTAG00000014238 ortholog_one2many 1 retrogene
retro_btau_244,
Callithrix jacchus ENSCJAG00000017277 possible_ortholog 1 retrogene
retro_cjac_1160,
Cavia porcellus ENSCPOG00000024559 ortholog_one2many 3 retrogenes
retro_cpor_172, retro_cpor_580, retro_cpor_76,
Dasypus novemcinctus ENSDNOG00000014592 possible_ortholog 3 retrogenes
retro_dnov_2037, retro_dnov_44, retro_dnov_688,
Equus caballus ENSECAG00000016487 ortholog_one2many 2 retrogenes
retro_ecab_165, retro_ecab_84,
Echinops telfairi ENSETEG00000019283 ortholog_one2many 2 retrogenes
retro_etel_1384, retro_etel_6,
Felis catus ENSFCAG00000008081 ortholog_one2many 4 retrogenes
retro_fcat_153, retro_fcat_602, retro_fcat_61, retro_fcat_654,
Homo sapiens ENSG00000131100 ortholog_one2many 3 retrogenes
retro_hsap_1126, retro_hsap_145, retro_hsap_21,
Gorilla gorilla ENSGGOG00000015027 ortholog_one2many 2 retrogenes
retro_ggor_105, retro_ggor_235,
Loxodonta africana ENSLAFG00000003802 ortholog_one2many 4 retrogenes
retro_lafr_1220, retro_lafr_123, retro_lafr_134, retro_lafr_742,
Microcebus murinus ENSMICG00000010643 ortholog_one2many 6 retrogenes
retro_mmur_1214, retro_mmur_1234, retro_mmur_813, retro_mmur_886, retro_mmur_971, retro_mmur_978,
Myotis lucifugus ENSMLUG00000014876 ortholog_many2many 2 retrogenes
retro_mluc_312, retro_mluc_57,
Macaca mulatta ENSMMUG00000021477 ortholog_one2many 4 retrogenes
retro_mmul_1102, retro_mmul_139, retro_mmul_370, retro_mmul_873,
Monodelphis domestica ENSMODG00000018452 ortholog_many2many 4 retrogenes
retro_mdom_1456, retro_mdom_1853, retro_mdom_248, retro_mdom_489,
Mustela putorius furo ENSMPUG00000018109 ortholog_many2many 2 retrogenes
retro_mputfur_23, retro_mputfur_4,
Mus musculus ENSMUSG00000019210 ortholog_one2many 1 retrogene
retro_mmus_122,
Nomascus leucogenys ENSNLEG00000007839 ortholog_one2many 1 retrogene
retro_nleu_18,
Oryctolagus cuniculus ENSOCUG00000006964 possible_ortholog 1 retrogene
retro_ocun_88,
Otolemur garnettii ENSOGAG00000013886 ortholog_one2many 5 retrogenes
retro_ogar_1255, retro_ogar_1401, retro_ogar_2930, retro_ogar_6, retro_ogar_839,
Ochotona princeps ENSOPRG00000004591 possible_ortholog 2 retrogenes
retro_opri_184, retro_opri_539,
Procavia capensis ENSPCAG00000016094 ortholog_one2many 1 retrogene
retro_pcap_455,
Pongo abelii ENSPPYG00000011560 ortholog_one2many 1 retrogene
retro_pabe_189,
Rattus norvegicus ENSRNOG00000011905 ortholog_many2many 1 retrogene
retro_rnor_383,
Sarcophilus harrisii ENSSHAG00000008300 ortholog_one2many 2 retrogenes
retro_shar_501, retro_shar_780,
Sus scrofa ENSSSCG00000000767 ortholog_one2many 3 retrogenes
retro_sscr_788, retro_sscr_789, retro_sscr_83,
Ictidomys tridecemlineatus ENSSTOG00000022031 ortholog_one2many 3 retrogenes
retro_itri_579, retro_itri_630, retro_itri_64,
Tarsius syrichta ENSTSYG00000010679 ortholog_one2many 5 retrogenes
retro_tsyr_1093, retro_tsyr_1812, retro_tsyr_23, retro_tsyr_532, retro_tsyr_797,
Tursiops truncatus ENSTTRG00000015931 ortholog_one2many 1 retrogene
retro_ttru_1,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_73 77.23 99.12
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2. retro_cfam_1050 53.33 52.21
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3. retro_cfam_1260 88.16 100.00
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4. retro_cfam_1354 84.65 100.00
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5. retro_cfam_1379 89.87 100.00
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6. retro_cfam_1446 76.77 84.51
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7. retro_cfam_1997 88.21 100.00
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Download FASTA sequences of all ENSCAFG00000016151 retrocopies