Parental gene:

LDHB, ENSCAFG00000012195

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:27:25473221..25492908(+)


>ENSCAFG00000012195
CTGAAGATTTTGCATAAACATTTATCACTATTTTCATGCCACTGTATTTATGAAGTATATGGCACAATGGCAACTCTTAA
GGAAAAACTGATTGCACCAGTTGCAGAAGAAGAGGCTGCAATCCCAAACAATAAGATCACTGTAGTGGGTGTTGGACAAG
TTGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCCCTTGTGGATGTTTTAGAAGATAAA
CTCAAAGGAGAAATGATGGATCTACAGCATGGGAGCTTATTTCTACAGACACCTAAAATTGTGGCAGATAAAGATTACTC
TGTGACTGCCAATTCTAAGATTGTGGTGGTGACTGCAGGAGTCCGCCAGCAGGAGGGAGAGAGCCGCCTCAATCTGGTGC
AAAGGAATGTTAATGTCTTCAAATTCATTATTCCTCAGATAGTCAAGTACAGTCCTGATTGTATCATAATTGTGGTTTCC
AACCCAGTGGATATTCTTACATATGTTACCTGGAAACTAAGTGGACTACCCAAGCACCGTGTGATTGGAAGTGGGTGTAA
TCTGGATTCTGCTAGATTTCGCTATCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCATGGATGGATTTTGG
GAGAACATGGTGACTCAAGTGTGGCTGTGTGGAGTGGAGTGAATGTGGCAGGTGTTTCTCTTCAGGAACTGAATCCAGAA
ATGGGAACAGACAACGACAGTGAAAATTGGAAGGAAGTTCATCTGATTTTTTTTCTTAGTGCCTATGAAGTCATCAAGCT
AAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTCATTGAATCCATGTTGAAAAATCTCTCCAGGATTC
ATCCAGTGTCAACAATGGTGAAGGGTATGTATGGTATTGAGAACGAAGTCTTCCTGAGTCTTCCGTGTATCCTGAACGCT
CGGGGCTTAACCAGTGTGATCAATCAGAAGCTGAAGGATGATGAGGTTGCCCAGCTCAAGAAAAGTGCAGATACCTTGTG
GGATATCCAGAAAGACCTAAAAGATCTGTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 92 .61 RPM
SRP017611_brain 105 .67 RPM
SRP017611_kidney 329 .39 RPM
SRP017611_liver 7 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Bos taurus ENSBTAG00000019603 possible_ortholog 4 retrogenes
retro_btau_1589, retro_btau_303, retro_btau_451, retro_btau_647,
Canis familiaris ENSCAFG00000009211 within_species_paralog 8 retrogenes
retro_cfam_1061, retro_cfam_1149, retro_cfam_1182, retro_cfam_1317, retro_cfam_1617, retro_cfam_1946, retro_cfam_2006, retro_cfam_309,
Choloepus hoffmanni ENSCHOG00000007658 ortholog_one2one 1 retrogene
retro_chof_1145,
Cavia porcellus ENSCPOG00000007138 possible_ortholog 1 retrogene
retro_cpor_762,
Dasypus novemcinctus ENSDNOG00000013620 possible_ortholog 4 retrogenes
retro_dnov_1161, retro_dnov_1511, retro_dnov_1570, retro_dnov_529,
Echinops telfairi ENSETEG00000019955 ortholog_one2many 1 retrogene
retro_etel_850,
Felis catus ENSFCAG00000012639 possible_ortholog 1 retrogene
retro_fcat_462,
Homo sapiens ENSG00000111716 possible_ortholog 1 retrogene
retro_hsap_4863,
Gorilla gorilla ENSGGOG00000015758 possible_ortholog 1 retrogene
retro_ggor_3033,
Loxodonta africana ENSLAFG00000000972 possible_ortholog 2 retrogenes
retro_lafr_197, retro_lafr_315,
Macropus eugenii ENSMEUG00000004825 ortholog_one2many 1 retrogene
retro_meug_311,
Microcebus murinus ENSMICG00000017183 possible_ortholog 2 retrogenes
retro_mmur_275, retro_mmur_300,
Myotis lucifugus ENSMLUG00000012155 possible_ortholog 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 possible_ortholog 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2many 1 retrogene
retro_mdom_1484,
Mustela putorius furo ENSMPUG00000000172 possible_ortholog 5 retrogenes
retro_mputfur_1300, retro_mputfur_1561, retro_mputfur_492, retro_mputfur_539, retro_mputfur_549,
Mus musculus ENSMUSG00000030246 possible_ortholog 4 retrogenes
retro_mmus_1817, retro_mmus_2035, retro_mmus_2509, retro_mmus_335,
Oryctolagus cuniculus ENSOCUG00000022015 possible_ortholog 1 retrogene
retro_ocun_805,
Otolemur garnettii ENSOGAG00000004763 possible_ortholog 9 retrogenes
retro_ogar_1469, retro_ogar_2093, retro_ogar_2344, retro_ogar_2459, retro_ogar_3288, retro_ogar_3342, retro_ogar_3383, retro_ogar_689, retro_ogar_721,
Pongo abelii ENSPPYG00000004356 possible_ortholog 3 retrogenes
retro_pabe_1738, retro_pabe_1744, retro_pabe_3780,
Pan troglodytes ENSPTRG00000004762 possible_ortholog 1 retrogene
retro_ptro_3237,
Pteropus vampyrus ENSPVAG00000002462 possible_ortholog 3 retrogenes
retro_pvam_1487, retro_pvam_320, retro_pvam_673,
Rattus norvegicus ENSRNOG00000013000 possible_ortholog 3 retrogenes
retro_rnor_2697, retro_rnor_2749, retro_rnor_2834,
Sorex araneus ENSSARG00000002565 possible_ortholog 1 retrogene
retro_sara_713,
Sus scrofa ENSSSCG00000000576 possible_ortholog 1 retrogene
retro_sscr_37,
Ictidomys tridecemlineatus ENSSTOG00000022058 possible_ortholog 2 retrogenes
retro_itri_501, retro_itri_648,
Tarsius syrichta ENSTSYG00000013759 possible_ortholog 7 retrogenes
retro_tsyr_1130, retro_tsyr_1532, retro_tsyr_1860, retro_tsyr_2051, retro_tsyr_334, retro_tsyr_64, retro_tsyr_986,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_17 98.20 100.00
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2. retro_cfam_93 96.71 100.00
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3. retro_cfam_111 95.26 63.17
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4. retro_cfam_174 94.61 100.00
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5. retro_cfam_701 94.02 65.73
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6. retro_cfam_1068 95.56 63.20
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7. retro_cfam_1674 87.76 100.00
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8. retro_cfam_1700 95.80 71.26
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9. retro_cfam_1836 79.40 64.89
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Download FASTA sequences of all ENSCAFG00000012195 retrocopies