Parental gene:

LDHB, ENSTSYG00000013759

Aliases:None
Description:lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541]
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_2144:84524..97564(-)


>ENSTSYG00000013759
TCTCTGGCTGATGAACTTGCTCTTGTGGATGTTTTGGAAGACAAACTTAAAGGAGAAATGATGGATCTGCAGCATGGGAG
CTTGTTTCTTCAGACACCTAAGATTGTGGCAGATAAAGATTACTCCGTGACTGCCAATTCTAAGATTGTGGTGGTAACTG
CAGGAGTCCGTCAGCAAGAGGGGGAGAGTCGTCTCAATCTGGTGCAGAGAAATGTTAATGTCTTCAAATTCATTATTCCT
CAGATTGTCAAGTATAGTCCTGATTGCATCATAATTGTGGTTTCCAACCCAGTGGACATTCTTACATATGTTACCTGGAA
ACTAAGTGGATTACCCAAGCATCGTGTGATTGGAAGTGGGTGTAATCTGGATTCTGCTAGATTTCGCTACCTTATGGCTG
AAAAACTCAGCATTCATCCCAGCAGCTGCCATGGATGGATTTTGGGAGAACATGGCGACTCAAGTGTGGCTGTGTGGAGT
GGAGTGAACGTGGCAGGTGTTTCTCTCCAGGAATTGAATCCAGAAATGGGAACAGAAAATGATAGTGAAAATTGGAAGGA
AGTGCATAAGATGGTGGTTGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTATGTATGGC
ATTGAGAATGAAGTCTTCCTGAGCCTTCCCTGTATCCTCAATGCTCGGGGATTAACAAGTGTTATTAACCAGAAGCTAAA
GGATGATGAGGTTGCTCAGCTCAAGAAAAGTGCAGATACACTGTGGGACATCCAGAAGGACCTAAAAGACCTGTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Canis familiaris ENSCAFG00000012195 possible_ortholog 9 retrogenes
retro_cfam_1068, retro_cfam_111, retro_cfam_1674, retro_cfam_17, retro_cfam_1700, retro_cfam_174, retro_cfam_1836, retro_cfam_701, retro_cfam_93,
Echinops telfairi ENSETEG00000019955 ortholog_one2one 1 retrogene
retro_etel_850,
Felis catus ENSFCAG00000012639 possible_ortholog 1 retrogene
retro_fcat_462,
Homo sapiens ENSG00000111716 ortholog_one2one 1 retrogene
retro_hsap_4863,
Macropus eugenii ENSMEUG00000004825 ortholog_one2one 1 retrogene
retro_meug_311,
Myotis lucifugus ENSMLUG00000012155 possible_ortholog 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 ortholog_one2many 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2one 1 retrogene
retro_mdom_1484,
Mustela putorius furo ENSMPUG00000000172 possible_ortholog 5 retrogenes
retro_mputfur_1300, retro_mputfur_1561, retro_mputfur_492, retro_mputfur_539, retro_mputfur_549,
Pongo abelii ENSPPYG00000004356 ortholog_one2one 3 retrogenes
retro_pabe_1738, retro_pabe_1744, retro_pabe_3780,
Pan troglodytes ENSPTRG00000004762 ortholog_one2one 1 retrogene
retro_ptro_3237,
Sus scrofa ENSSSCG00000000576 possible_ortholog 1 retrogene
retro_sscr_37,
Tarsius syrichta ENSTSYG00000008062 within_species_paralog 4 retrogenes
retro_tsyr_1811, retro_tsyr_2064, retro_tsyr_2071, retro_tsyr_731,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_64 83.23 53.26
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2. retro_tsyr_334 63.59 65.98
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3. retro_tsyr_986 76.68 66.32
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4. retro_tsyr_1130 81.50 58.76
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5. retro_tsyr_1532 75.00 65.98
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6. retro_tsyr_1860 75.00 65.98
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7. retro_tsyr_2051 66.84 65.29
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Download FASTA sequences of all ENSTSYG00000013759 retrocopies