Parental gene:

BT.106487, ENSBTAG00000040497

Aliases:LIN28A, LIN28
Description:protein lin-28 homolog A [Source:RefSeq peptide;Acc:NP_001179986]
Organism:Cow (Bos taurus)
Coordinates:2:127299733..127310992(-)


>ENSBTAG00000040497
ATGGGCTCTGTGTCAAACCAGCAGTTCGCAGGTGGCTGCGCTAAGGCGCCGGAGGAGGCGCCGGAGGACGCGGCCCGCGC
GGCGGAGGAGCCGCAGCTGCTGCACGGTGCGGGCATCTGTAAGTGGTTCAACGTGCGCATGGGGTTCGGCTTCCTGTCCA
TGACCGCCCGCGCAGGGGTCGCGCTCGACCCCCCGGTGGATGTCTTTGTGCACCAGAGTAAGCTGCACATGGAGGGCTTC
CGGAGCCTGAAGGAGGGGGAGGCCGTGGAGTTCACCTTTAAGAAGTCCGCCAAAGGCCTGGAATCTATCCGAGTCACCGG
CCCTGGGGGGGTGTTCTGTATTGGGAGTGAAAGGCGGCCCAAAGGGAAGAATATGCAGAAACGCAGATCAAAGGGAGACA
GGTGCTACAACTGTGGAGGTCTAGACCATCATGCCAAGGAGTGCAAACTGCCACCGCAGCCCAAGAAGTGCCATTTCTGC
CAGAGCATCAACCATATGGTAGCTTCGTGCCCACTGAAGGCCCAGCAAGCTCCCAGCTCCCAGGGAAAGCCAGCCTACTT
TCGGGAGGAGGAAGAAGAGATCCATAGCTCTGCCATGCTCCCAGAGGCCCAGAATTGA

Library Parental gene expression (RPM)
ERP005899_liver 0 .00 RPM
ERP005899_muscle 0 .00 RPM
SRP017611_brain 0 .00 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_liver 0 .00 RPM
SRP030211_testis 0 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010582 possible_ortholog 2 retrogenes
retro_amel_396, retro_amel_649,
Canis familiaris ENSCAFG00000012488 possible_ortholog 2 retrogenes
retro_cfam_2049, retro_cfam_767,
Callithrix jacchus ENSCJAG00000009796 ortholog_many2many 5 retrogenes
retro_cjac_1468, retro_cjac_1784, retro_cjac_186, retro_cjac_2597, retro_cjac_33,
Cavia porcellus ENSCPOG00000019646 ortholog_many2many 1 retrogene
retro_cpor_120,
Dasypus novemcinctus ENSDNOG00000010710 ortholog_one2many 5 retrogenes
retro_dnov_102, retro_dnov_1112, retro_dnov_2300, retro_dnov_690, retro_dnov_853,
Equus caballus ENSECAG00000020267 possible_ortholog 1 retrogene
retro_ecab_258,
Homo sapiens ENSG00000131914 ortholog_one2many 2 retrogenes
retro_hsap_2187, retro_hsap_2450,
Gorilla gorilla ENSGGOG00000024918 ortholog_one2many 2 retrogenes
retro_ggor_1526, retro_ggor_1732,
Myotis lucifugus ENSMLUG00000010158 possible_ortholog 1 retrogene
retro_mluc_1023,
Nomascus leucogenys ENSNLEG00000009294 ortholog_one2many 4 retrogenes
retro_nleu_204, retro_nleu_2300, retro_nleu_2896, retro_nleu_316,
Oryctolagus cuniculus ENSOCUG00000000299 ortholog_many2many 1 retrogene
retro_ocun_19,
Otolemur garnettii ENSOGAG00000003971 ortholog_one2many 1 retrogene
retro_ogar_481,
Pongo abelii ENSPPYG00000001684 ortholog_one2many 3 retrogenes
retro_pabe_1801, retro_pabe_2067, retro_pabe_2849,
Pan troglodytes ENSPTRG00000000384 ortholog_one2many 2 retrogenes
retro_ptro_1415, retro_ptro_1665,
Pteropus vampyrus ENSPVAG00000017267 possible_ortholog 1 retrogene
retro_pvam_110,
Rattus norvegicus ENSRNOG00000038409 ortholog_one2many 2 retrogenes
retro_rnor_2076, retro_rnor_2077,
Sus scrofa ENSSSCG00000003557 possible_ortholog 1 retrogene
retro_sscr_358,
Ictidomys tridecemlineatus ENSSTOG00000004329 ortholog_one2many 1 retrogene
retro_itri_1647,
Tursiops truncatus ENSTTRG00000005678 ortholog_one2many 4 retrogenes
retro_ttru_1312, retro_ttru_1559, retro_ttru_481, retro_ttru_548,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_199 93.17 100.00
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2. retro_btau_1150 80.93 94.15
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3. retro_btau_1594 88.89 100.00
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Download FASTA sequences of all ENSBTAG00000040497 retrocopies