Parental gene:

BT.49114, ENSBTAG00000014226

Aliases:None
Description:60S ribosomal protein L34 [Source:RefSeq peptide;Acc:NP_001193150]
Organism:Cow (Bos taurus)
Coordinates:6:17828129..17832711(-)


>ENSBTAG00000014226
CTCTTCCCAGGACGGCATCTAGAGGCCTTCAGGATGGTGCAGCGTCTGACGTACCGTCGTAGGCTGTCCTACAATACAGC
CTCTAACAAAACCAGGCTGTCCCGGACCCCTGGTAACAGAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAA
AATCTGCATGTGGTGTGTGCCCAGGCCGACTGAGAGGCGTTCGTGCTGTGAGACCAAAAGTTCTCATGAGGTTGTCTAAA
ACGAAGAAACACGTCAGCCGAGCCTATGGTGGTTCCATGTGTGCTAAATGTGTCCGCGACAGGATCAAGCGCGCTTTCCT
TATTGAAGAGCAGAAGATCGTTGTGAAAGTATTGAAAGCACAAGCACAGAGTCAGAAAGCTAAATAA

Library Parental gene expression (RPM)
ERP005899_liver 105 .91 RPM
ERP005899_muscle 575 .82 RPM
SRP017611_brain 50 .80 RPM
SRP017611_kidney 134 .37 RPM
SRP017611_liver 76 .57 RPM
SRP030211_testis 71 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001758 ortholog_one2one 20 retrogenes
retro_amel_1151, retro_amel_1298, retro_amel_1402, retro_amel_147, retro_amel_1595, retro_amel_1670, retro_amel_1678, retro_amel_1755, retro_amel_240, retro_amel_368, retro_amel_388, retro_amel_410, retro_amel_477, retro_amel_655, retro_amel_690, retro_amel_739, retro_amel_874, retro_amel_936, retro_amel_949, retro_amel_978,
Cavia porcellus ENSCPOG00000000802 ortholog_one2one 6 retrogenes
retro_cpor_139, retro_cpor_1494, retro_cpor_402, retro_cpor_485, retro_cpor_694, retro_cpor_732,
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2one 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2one 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Macaca mulatta ENSMMUG00000011901 ortholog_one2one 1 retrogene
retro_mmul_162,
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Mustela putorius furo ENSMPUG00000008873 ortholog_one2one 17 retrogenes
retro_mputfur_1028, retro_mputfur_1095, retro_mputfur_1130, retro_mputfur_1170, retro_mputfur_12, retro_mputfur_1242, retro_mputfur_1305, retro_mputfur_1480, retro_mputfur_1501, retro_mputfur_360, retro_mputfur_378, retro_mputfur_475, retro_mputfur_517, retro_mputfur_557, retro_mputfur_562, retro_mputfur_852, retro_mputfur_923,
Pongo abelii ENSPPYG00000014988 possible_ortholog 18 retrogenes
retro_pabe_1171, retro_pabe_1351, retro_pabe_1609, retro_pabe_1630, retro_pabe_1859, retro_pabe_2338, retro_pabe_2560, retro_pabe_2784, retro_pabe_2931, retro_pabe_3330, retro_pabe_3352, retro_pabe_3375, retro_pabe_3788, retro_pabe_385, retro_pabe_420, retro_pabe_566, retro_pabe_77, retro_pabe_827,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
retro_psin_60,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_288 86.40 97.66
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2. retro_btau_404 58.43 69.53
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3. retro_btau_465 94.12 66.41
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4. retro_btau_628 81.25 100.00
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5. retro_btau_712 87.20 96.09
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6. retro_btau_904 78.91 98.44
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7. retro_btau_1017 59.35 95.31
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8. retro_btau_1141 64.57 97.66
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9. retro_btau_1280 57.03 98.44
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10. retro_btau_1303 60.24 64.84
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11. retro_btau_1372 70.53 73.44
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12. retro_btau_1476 56.76 57.03
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13. retro_btau_1738 88.79 82.81
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Download FASTA sequences of all ENSBTAG00000014226 retrocopies