Parental gene:

BT.37860, ENSBTAG00000012152

Aliases:None
Description:non-POU domain-containing octamer-binding protein [Source:RefSeq peptide;Acc:NP_001040019]
Organism:Cow (Bos taurus)
Coordinates:X:84662117..84675255(-)


>ENSBTAG00000012152
CGTCTCGTTTCCGGCGGTCGCGCGCTCTTTTCTCGGGACGGTAAAGGCCGTGTAGCGTCGCCGTTACTGTTAAGAAGCAA
AAATGGAAATTGTGGGAGCAAAATACAGAGTCCATTAAATAAAACAACTTTATATAAACTTAACTGCATTGATATTTTCA
GTTTTGGTACAAAGATGCAGAGCAATAAAACTTTTAACTTGGAGAAACAAAACCACACTCCAAGGAAGCATCATCAACAT
CACCATCAGCAGCACCACCAGCAGCAACAGCAGCAGCCACCACCTCCACCAATGCCTGCAAATGGGCAGCAAGCCAGCAG
CCAGAATGAAGGCTTGACTATTGACCTGAAGAATTTTAGGAAACCAGGAGAGAAGACCTTCACCCAGCGTAGCCGGCTCT
TTGTGGGCAATCTTCCTCCTGACATCACTGAGGAGGAAATGAGGAAACTGTTTGAGAAATATGGGAAGGCAGGCGAAGTC
TTCATTCATAAGGACAAGGGCTTTGGCTTTATCCGCTTGGAAACACGAACCCTAGCGGAGATTGCCAAAGTAGAACTGGA
CAACATGCCACTCCGTGGAAAGCAGCTGCGTGTGCGCTTTGCCTGCCATAGTGCATCCCTTACAGTCAGAAACCTTCCTC
AGTATGTGTCCAATGAACTGCTGGAGGAGGCCTTTTCTGTGTTCGGCCAGGTGGAGAGGGCTGTAGTCATTGTGGATGAT
CGAGGCAGGCCCTCAGGAAAAGGCATTGTTGAATTCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGACAGATGCAGTGA
AGGCTCCTTCCTGCTAACCACATTTCCTCGACCTGTGACTGTGGAGCCCATGGACCAGTTAGATGATGAGGAGGGACTCC
CAGAGAAGCTGGTTATAAAGAATCAGCAATTTCACAAAGAGCGAGAGCAGCCACCCAGATTTGCACAGCCTGGCTCCTTT
GAGTATGAGTATGCCATGCGCTGGAAGGCACTTATTGAGATGGAAAAGCAGCAGCAGGACCAAGTGGACCGAAACATCAA
GGAAGCTCGTGAGAAGCTGGAGATGGAGATGGAGGCTGCTCGCCATGAGCACCAGGTCATGCTAATGAGGCAGGATTTGA
TGAGGCGTCAAGAAGAACTTCGGAGGATGGAAGAGCTGCACAATCAAGAAGTGCAAAAACGAAAGCAGCTGGAGCTCAGG
CAGGAGGAGGAGCGCAGGCGCCGTGAGGAAGAGATGCGGCGGCAACAAGAAGAAATGATGCGACGACAGCAGGAAGGATT
CAAGGGAACCTTCCCTGATGCGAGAGAGCAAGAGATACGGATGGGTCAGATGGCTATGGGAGGTGCTATGGGCATAAACA
ACAGAGGTGCCATGCCCCCTGCTCCTGTGCCAGCTGGTACCCCAGCTCCTCCAGGACCAGCCACTATGATGCCAGATGGA
ACCTTGGGATTGACCCCACCAACAACTGAACGCTTTGGCCAAGCTGCTACAATGGAAGGAATTGGGGCAATTGGTGGAAC
CCCTCCTGCATTCAACCGTGCAGCTCCTGGAGCTGAATTTGCTCCAAACAAACGTCGCCGATACTAA

Library Parental gene expression (RPM)
ERP005899_liver 24 .37 RPM
ERP005899_muscle 221 .34 RPM
SRP017611_brain 50 .02 RPM
SRP017611_kidney 90 .80 RPM
SRP017611_liver 28 .32 RPM
SRP030211_testis 26 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016057 ortholog_one2one 2 retrogenes
retro_amel_1438, retro_amel_795,
Canis familiaris ENSCAFG00000017071 ortholog_one2many 1 retrogene
retro_cfam_98,
Callithrix jacchus ENSCJAG00000036744 ortholog_one2many 1 retrogene
retro_cjac_3990,
Equus caballus ENSECAG00000008502 ortholog_one2one 2 retrogenes
retro_ecab_357, retro_ecab_427,
Felis catus ENSFCAG00000014807 ortholog_one2one 2 retrogenes
retro_fcat_1219, retro_fcat_147,
Homo sapiens ENSG00000147140 ortholog_one2one 1 retrogene
retro_hsap_1699,
Gorilla gorilla ENSGGOG00000006194 ortholog_one2one 1 retrogene
retro_ggor_1273,
Microcebus murinus ENSMICG00000000232 ortholog_one2one 1 retrogene
retro_mmur_569,
Myotis lucifugus ENSMLUG00000002489 ortholog_one2one 1 retrogene
retro_mluc_622,
Mustela putorius furo ENSMPUG00000004937 ortholog_one2one 1 retrogene
retro_mputfur_937,
Mus musculus ENSMUSG00000031311 ortholog_one2one 2 retrogenes
retro_mmus_3652, retro_mmus_632,
Nomascus leucogenys ENSNLEG00000001278 ortholog_one2one 1 retrogene
retro_nleu_1344,
Oryctolagus cuniculus ENSOCUG00000021848 ortholog_one2many 2 retrogenes
retro_ocun_1317, retro_ocun_1804,
Otolemur garnettii ENSOGAG00000004834 ortholog_one2one 3 retrogenes
retro_ogar_1525, retro_ogar_546, retro_ogar_593,
Pongo abelii ENSPPYG00000020451 ortholog_one2one 1 retrogene
retro_pabe_1398,
Pan troglodytes ENSPTRG00000022010 ortholog_one2one 1 retrogene
retro_ptro_1150,
Pteropus vampyrus ENSPVAG00000016503 ortholog_one2one 1 retrogene
retro_pvam_444,
Rattus norvegicus ENSRNOG00000003689 ortholog_one2one 2 retrogenes
retro_rnor_1178, retro_rnor_1503,
Sorex araneus ENSSARG00000007959 ortholog_one2one 2 retrogenes
retro_sara_661, retro_sara_663,
Drosophila melanogaster FBgn0004227 ortholog_many2many 1 retrogene
retro_dmel_11,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_313 93.87 89.58
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2. retro_btau_1027 94.27 82.39
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Download FASTA sequences of all ENSBTAG00000012152 retrocopies