RetrogeneDB ID: retro_ogar_59

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873544.1:15530956..15531337(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000032821
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000028898
• Aliases: None
• Description: None

Sequence

>retro_ogar_59
GTGGCCATGGCATCGGGGGCAGGTGGGGTGGCCTACTTCCAGAGGGGCTCTCTGCCCTGGTTCACGGTCATCTTCCTTGC
CTTTGGCTACTACACATGGGTTGTTTTCTGGCCTCAGAGTATCCCGTATCAGAGCCTGGGGCCCCTGGGTACCTTTACTC
AGTACTTAGTAGACAACCATCACACCCTCCTGCGAAGTGGGTATTGGTTTGCCTGGCTGATTCACGTGGGCAAGTCCTTG
TATGCCATGGTATTGCGCAAACATAAAGGCATCACAGATGGTCAAGCTCGGTTGCTCTGGTTCCTACAGACTTTCCTATT
TGGGATAGCATCTCTCTCCATCTTGATTGCTTACAGACCGAAGCGCCAAAAACAAACTTAA

Alignment

ORF - retro_ogar_59 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.9 %
• Parental protein coverage: 78.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AYFRTARPLPSLVTVLGLGYCAWVVFWPQSIPYQSLGPLGTFTQYLVDNHHTLLRTGYWLAWLIHVGESL
          AYF.........V..L..GY..WVVFWPQSIPYQSLGPLGTFTQYLVDNHHTLLR.GYW.AWLIHVG.SL
Retrocopy AYFQRGSLPWFTVIFLAFGYYTWVVFWPQSIPYQSLGPLGTFTQYLVDNHHTLLRSGYWFAWLIHVGKSL

Parental  YAMVLCKHKGITDGQARLLWFLQTFLLGIASLSILIAYKPKRQKQT
          YAMVL.KHKGITDGQARLLWFLQTFL.GIASLSILIAY.PKRQKQT
Retrocopy YAMVLRKHKGITDGQARLLWFLQTFLFGIASLSILIAYRPKRQKQT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_59 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 38 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012986	4 retrocopies	retro_amel_1410, retro_amel_1554, retro_amel_1777, retro_amel_821,
Bos taurus	ENSBTAG00000001656	1 retrocopy	retro_btau_316,
Canis familiaris	ENSCAFG00000015748	3 retrocopies	retro_cfam_602, retro_cfam_635, retro_cfam_637,
Callithrix jacchus	ENSCJAG00000007670	1 retrocopy	retro_cjac_3839,
Dasypus novemcinctus	ENSDNOG00000024625	1 retrocopy	retro_dnov_555,
Felis catus	ENSFCAG00000026147	1 retrocopy	retro_fcat_401,
Homo sapiens	ENSG00000133678	1 retrocopy	retro_hsap_1692,
Myotis lucifugus	ENSMLUG00000007585	16 retrocopies	retro_mluc_1178, retro_mluc_2482, retro_mluc_2491, retro_mluc_2492, retro_mluc_2528, retro_mluc_2532, retro_mluc_2550, retro_mluc_2551, retro_mluc_2552, retro_mluc_2572, retro_mluc_2573, retro_mluc_2583, retro_mluc_2586, retro_mluc_2603, retro_mluc_2623, retro_mluc_766,
Macaca mulatta	ENSMMUG00000003015	1 retrocopy	retro_mmul_1583,
Mustela putorius furo	ENSMPUG00000003613	2 retrocopies	retro_mputfur_400, retro_mputfur_407,
Mus musculus	ENSMUSG00000072676	1 retrocopy	retro_mmus_2102,
Nomascus leucogenys	ENSNLEG00000010657	1 retrocopy	retro_nleu_1337,
Oryctolagus cuniculus	ENSOCUG00000013679	1 retrocopy	retro_ocun_453,
Otolemur garnettii	ENSOGAG00000028898	1 retrocopy	retro_ogar_59 ,
Pongo abelii	ENSPPYG00000002293	1 retrocopy	retro_pabe_1393,
Tarsius syrichta	ENSTSYG00000006920	1 retrocopy	retro_tsyr_103,
Tursiops truncatus	ENSTTRG00000006122	1 retrocopy	retro_ttru_454,