RetrogeneDB ID: retro_nleu_1337

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397289.1:10967279..10967510(-)
• Located in intron of: ENSNLEG00000003566

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C10ORF57
• Ensembl ID: ENSNLEG00000010657
• Aliases: None
• Description: None

Sequence

>retro_nleu_1337
GCCAGCAGTGCAGCTGCCACCTACTTCTGTCCAGCCAGACCCTTGCCCTTGCTGGTCACGGTCCTGGGGCTGGACTGCTT
CACATGGGTTGTCTTTTGGCCTTGGAGTATCCTTTATCAGAGCCTTGGGCCCCTGGACTCCTTCACTCAGTACTTGGTGG
GCCACCATCACACCATCCTGTGCAGTGGGTATTGGCTTGCCTGGCTGAGTCATGTGGGAGAGTCCTTGTAT

Alignment

ORF - retro_nleu_1337 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.04 %
• Parental protein coverage: 62.6 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ATAAGAAYFQRGSLFWFTVITLSFGYYTWVVFWPQSIPYQNLGPLGPFTQYLVDHHHTLLRNGYWLAWLI
          A..A.A.YF.........V..L.....TWVVFWP.SI.YQ.LGPL..FTQYLV.HHHT.L..GYWLAWL.
Retrocopy ASSAAATYFCPARPLPLLVTVLGLDCFTWVVFWPWSILYQSLGPLDSFTQYLVGHHHTILCSGYWLAWLS

Parental  HVGESLY
          HVGESLY
Retrocopy HVGESLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1337 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012986	4 retrocopies	retro_amel_1410, retro_amel_1554, retro_amel_1777, retro_amel_821,
Bos taurus	ENSBTAG00000001656	1 retrocopy	retro_btau_316,
Homo sapiens	ENSG00000133678	1 retrocopy	retro_hsap_1692,
Mustela putorius furo	ENSMPUG00000003613	2 retrocopies	retro_mputfur_400, retro_mputfur_407,
Mus musculus	ENSMUSG00000072676	1 retrocopy	retro_mmus_2102,
Nomascus leucogenys	ENSNLEG00000010657	1 retrocopy	retro_nleu_1337 ,
Oryctolagus cuniculus	ENSOCUG00000013679	1 retrocopy	retro_ocun_453,
Otolemur garnettii	ENSOGAG00000028898	1 retrocopy	retro_ogar_59,
Pongo abelii	ENSPPYG00000002293	1 retrocopy	retro_pabe_1393,