Parental gene:

TMEM254, ENSCJAG00000007670

Aliases:None
Description:transmembrane protein 254 [Source:HGNC Symbol;Acc:25804]
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:44320172..44334410(-)


>ENSCJAG00000007670
CCAGGGGCGGAGACGGCTGGGGAGTTCCCAGACAACTCTGTGTCTAGGTTTTTCAAGAGGATGGCGAAGTCGAAGGCCAG
CAGCGCAGCTACCGCCTATTTCCGTCCACCCAGACCCTTGCCCTCTCTGGTCACAGTCCTGGGGCTGGGCCACTTCGCGT
GGGTTGTCTTCTGGCCTCAGAGTATCCCTTATCAGAGCCTTGGGCCCTTGGGCTCTTTCACTCAGTACTTGGTGGACCAC
CATCACACCCTCCTGAGCAATGGGTATTGGCTTGCCTGGCTGATTCATGTGGGAGAGTCCTTGTATGCCATAGTATTGTG
CAAGCACAAAGGCATCACAAGTGGTCGGGCTCAGCTACTCTGGTTCCTACAGACTTTCCTGTTTGGGATAGCGTCTCTCA
GCATCTTGATTGCTTACAAACCGAAGCGCCAAAAACAAACTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .76 RPM
SRP051959_skeletal_muscle 0 .17 RPM
SRP051959_lymph_node 0 .43 RPM
SRP051959_lung 1 .17 RPM
SRP051959_liver 2 .99 RPM
SRP051959_kidney 1 .75 RPM
SRP051959_heart 0 .51 RPM
SRP051959_colon 4 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015748 ortholog_one2one 3 retrogenes
retro_cfam_602, retro_cfam_635, retro_cfam_637,
Dasypus novemcinctus ENSDNOG00000024625 ortholog_one2one 1 retrogene
retro_dnov_555,
Felis catus ENSFCAG00000026147 ortholog_one2one 1 retrogene
retro_fcat_401,
Myotis lucifugus ENSMLUG00000007585 ortholog_one2one 16 retrogenes
retro_mluc_1178, retro_mluc_2482, retro_mluc_2491, retro_mluc_2492, retro_mluc_2528, retro_mluc_2532, retro_mluc_2550, retro_mluc_2551, retro_mluc_2552, retro_mluc_2572, retro_mluc_2573, retro_mluc_2583, retro_mluc_2586, retro_mluc_2603, retro_mluc_2623, retro_mluc_766,
Macaca mulatta ENSMMUG00000003015 ortholog_one2one 1 retrogene
retro_mmul_1583,
Mus musculus ENSMUSG00000072676 ortholog_one2many 1 retrogene
retro_mmus_2102,
Oryctolagus cuniculus ENSOCUG00000013679 possible_ortholog 1 retrogene
retro_ocun_453,
Otolemur garnettii ENSOGAG00000028898 ortholog_one2one 1 retrogene
retro_ogar_59,
Tarsius syrichta ENSTSYG00000006920 ortholog_one2one 1 retrogene
retro_tsyr_103,
Tursiops truncatus ENSTTRG00000006122 ortholog_one2one 1 retrogene
retro_ttru_454,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3839 92.74 100.00
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Download FASTA sequences of all ENSCJAG00000007670 retrocopies