RetrogeneDB ID: retro_nleu_2091

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397327.1:12785260..12787544(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000018242
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UTP14A
• Ensembl ID: ENSNLEG00000015258
• Aliases: None
• Description: None

Sequence

>retro_nleu_2091
ATGAATGTGAACCAGGTTGTGGAGAATCTGGCTTTGAGCCAACAGGAAGAACTAGAGGATTTGCCAAAAAACTACCCCTT
GAGTGAGAATGAAGATGAGGGGGACAGTGATGGAGAGAGAAAGCATCAAAAGCTTCTGGAAGCAATTAGTTCCCTTGATG
GAAAGAATAGGTGGAAATTGGCTGAGAGGTCTGAGGCTAGTCTGAAAGTGTCAGAGTTCAGCGTCAGTTCTGAAGGATCA
GGAGAAAAGCTGGTCCTTGCAGATCTGCTTGAGCCCGTTAAAACTTCATCTTCTTTGGCCACTGTAAAAAAGCAACTGAA
GAGAGTCAAATCAAAGAAGGTGGTGGAGTTACCTCTTAACAAAGAAAAGATTGAACAGATCCACAGAGAAGTAGCATTCG
GTAAAACCTCACAAGTCCTCTCCAAATGGGACCCTATCGTCCTGAAGAACCAGCAGGCAGAGCAGCTGGTTTTTCCCCTG
GGGAAGGAGCAGCCAGCCATTGCTCCCATTGAACATGCGCTCAGTGGCTGGAAGGCAAGAACTCCCCTGGAGCAGGAAAT
TTTTAACCTCCTCCGTAAGAACAAGCAGCCAGTGACAGATCCTTTGCTGACTCCCATGGAAAAGGCCTCTCTCCGAGCCA
TGAGCCTGGAAGAGGCAAAGATGCACCGAGCAGAGCTTCAGAGGGCTCGGGCTCTGCAGTCCTACTATGAGGCCAAGGCT
CGAAGAGAGAAGAAAATCAAAAGTAAAAAGTATCACAAAGTCATGAAGAAAGGAAAGGCCAAGAAAACCTTAAAAGAGTT
TGAGCAGCTGCAGAAGGTTAATCCAACTGTGGCATTGGAAGAAATGGAAAAAATTGAAAATGCCAGAATGATGGAAAGAA
TGAGCCTTAAGCACCAAAACAGTGGGAAATGGGCCAAGTCAAAGGCAATTATGGCCAAATATGACCTGGAGGCTCGCCAA
GCTATGCAGGAACAGTTGGCCAAGAACAAAGAACTGACACAGAAACTCCAGGTAGCCTCTGAGAGTGAGGAAGAGGAGGG
AGGCACAGAAGAAGTGGAAGAACTCCTTGTCCCTCATGTAGTGAATGAAGTGCAGATGAATGTGGACGGACTGAATCCCT
GGATGTTCAGGAGCTGCACCAGTGACACCAAAGAGGCTGCAACACAGGAGGACCCTGAGCAACTGCCAGAGCTTGCGGCT
CATGAGGTTTCTGAAAGTGAGGCAGAAGAAAGGCCAGTGGCAGAGGAAGAAATTTTGTTGAGAGAATTTGAGGAGAGGCA
ATCCCTTAGAAAAAGATCTGAGCTCAACCAGGATGCTGAGCCAGCAGGCAGTCAAGAAACAAAAGATTCTAGCAGCCAGG
AGGTGCTGTCCGAATTGAGGGCACTATCTCAGAAATTGAAGGAAAAACATCAGTCCAGGAAGCAAAAAGCAAGTTCAGAG
GGGACTGTTCCCCAGGTCCAGAGAGAGGAACCTGCCCCAGAAGAAGCGGAGCCCCTGTTGCTACAGAGGTCAGAGAGAGT
ACAAACTCTGAAAGAGCTAGAAGAGCTGGGAAAAGAAGATTGTTTTCAAAATAAGGAGCTTCCCAGACCTGTGTTAGAAG
GGCAGCAGTCAGAGAGGACCCCAAATAATTGGCCTGATGCCCCTAAGGAGAAGAAAGAGAAGGAGCAACTGATCGACCTA
CAGAACTTCCTAACCACACAGTCTCCTTCCATGAGGTCTTTGGCAGTTCCCACAATAATAGAGGAGCTGGAAGATGAAGA
GGAGAGAGACCAAAGGCAGATGATAAAGGAAGCTTTTGCTGGGGATGGTGTCATCAGAGATTTCTTGAAAGAGAAGAGGG
AAGCTGTGGAGGCGAGTAAGCCAAAGGACGTGGACCTAACACTACCTGGCTGGGGCGAGTGGGGTGGTGTGGGCCTAAAG
CCCAGTGCCAAGAAAAGATGCCAGTTTCTTATTAAAGCCTCTGAGGGTCCTCCAAGAAAAGATAAGAATTTGCCAAATGT
GATTATCAGTGAGAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGCTTCCATATCCATTTACCCACCATCGGC
AATTTGAAAGGACCATCCAGACCCCTATAGGATCCACATGGAATACCCAGAGGGCTTTCCAAAAGCTGACTACTCCCAAG
GTCGTCACCAAGCCAGGCCATATCATTAAGCCAATAAAAGCAGAGGATGTGGGCTACCAGTCTTCCTCAAGGTCGGACCT
GCCTGTCATACAGAGGAATCCAAAACGAATCACCACACGTCACA

Alignment

ORF - retro_nleu_2091 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.25 %
• Parental protein coverage: 99.61 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MTANRLAESLLALSQQEELADLPKDYLLSESEDEGDNDGERKHQKLLEAISSLDGKNRRKLAERSEASLK
          M..N...E.L.ALSQQEEL.DLPK.Y.LSE.EDEGD.DGERKHQKLLEAISSLDGKNR.KLAERSEASLK
Retrocopy MNVNQVVENL-ALSQQEELEDLPKNYPLSENEDEGDSDGERKHQKLLEAISSLDGKNRWKLAERSEASLK

Parental  VSEFNVSSEGSGEKLVLADLLEPVKTSSSLATVKKQLNRVKSKKTVELPLNKEEIERIHREVAFNKTAQV
          VSEF.VSSEGSGEKLVLADLLEPVKTSSSLATVKKQL.RVKSKK.VELPLNKE.IE.IHREVAF.KT.QV
Retrocopy VSEFSVSSEGSGEKLVLADLLEPVKTSSSLATVKKQLKRVKSKKVVELPLNKEKIEQIHREVAFGKTSQV

Parental  LSKWDPVVLKNRQAEQLVFPLEKEEPAIAPIEHVLSGWKARTPLEQEIFNLLHKNKQPVTDPLLTPVEKA
          LSKWDP.VLKN.QAEQLVFPL.KE.PAIAPIEH.LSGWKARTPLEQEIFNLL.KNKQPVTDPLLTP.EKA
Retrocopy LSKWDPIVLKNQQAEQLVFPLGKEQPAIAPIEHALSGWKARTPLEQEIFNLLRKNKQPVTDPLLTPMEKA

Parental  SLRAMSLEEAKMRRAELQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAAL
          SLRAMSLEEAKM.RAELQRARALQSYYEAKARREKKIKSKKYHKV.KKGKAKK.LKEFEQL.KVNP..AL
Retrocopy SLRAMSLEEAKMHRAELQRARALQSYYEAKARREKKIKSKKYHKVMKKGKAKKTLKEFEQLQKVNPTVAL

Parental  EELEKIEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEEEGGT
          EE.EKIE.ARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEEEGGT
Retrocopy EEMEKIENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEEEGGT

Parental  EDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEAATQEDPEQLPELEAHGVSESEGEERPVAEEEIL
          E.VEELLVP.VVNEVQMN.DG.NPWM.RSCTSDTKEAATQEDPEQLPEL.AH.VSESE.EERPVAEEEIL
Retrocopy EEVEELLVPHVVNEVQMNVDGLNPWMFRSCTSDTKEAATQEDPEQLPELAAHEVSESEAEERPVAEEEIL

Parental  LREFEERRSLRKRSELSQDAEPAGSQETKDSGSQEVLSELRALSQKLKENHQSRKQKASSEGTIPQVQRD
          LREFEER.SLRKRSEL.QDAEPAGSQETKDS.SQEVLSELRALSQKLKE.HQSRKQKASSEGT.PQVQR.
Retrocopy LREFEERQSLRKRSELNQDAEPAGSQETKDSSSQEVLSELRALSQKLKEKHQSRKQKASSEGTVPQVQRE

Parental  EPAPEEEEPLLLQRPERVQTLEELEELGKEECFQNKELPRPVLEGQQSERTPNNRPDAPKEKKKKEQMID
          EPAPEE.EPLLLQR.ERVQTL.ELEELGKE.CFQNKELPRPVLEGQQSERTPNN.PDAPKEKK.KEQ.ID
Retrocopy EPAPEEAEPLLLQRSERVQTLKELEELGKEDCFQNKELPRPVLEGQQSERTPNNWPDAPKEKKEKEQLID

Parental  LRNLLTTQSPSVKSLAVPT-IEELEDEEERNQRQMIKEAFAGDDVIRDFLKEKREAVEASKPKDVDLTLP
          L.N.LTTQSPS..SLAVPT.IEELEDEEER.QRQMIKEAFAGD.VIRDFLKEKREAVEASKPKDVDLTLP
Retrocopy LQNFLTTQSPSMRSLAVPTIIEELEDEEERDQRQMIKEAFAGDGVIRDFLKEKREAVEASKPKDVDLTLP

Parental  GWGEWGGVGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHAAAHQVRVLPYPFTHHWQFERTI
          GWGEWGGVGLKPSAKKR..FLIKA.EGPPRKDKNLPNVII.EKRNIHAAAHQV.VLPYPFTHH.QFERTI
Retrocopy GWGEWGGVGLKPSAKKRCQFLIKASEGPPRKDKNLPNVIISEKRNIHAAAHQVQVLPYPFTHHRQFERTI

Parental  QTPIGSTWNTQRAFQKLTTPKVVTKPGHIINPLEAQDVGYRTSSWSDLSVLQRNP-NKSPSPT
          QTPIGSTWNTQRAFQKLTTPKVVTKPGHII.P..A.DVGY..SS.SDL.V.QRNP.N.SP..T
Retrocopy QTPIGSTWNTQRAFQKLTTPKVVTKPGHIIKPIKAEDVGYQSSSRSDLPVIQRNP>NESPHVT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2091 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 14 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000013671	2 retrocopies	retro_btau_133, retro_btau_1706,
Cavia porcellus	ENSCPOG00000014231	2 retrocopies	retro_cpor_1272, retro_cpor_242,
Dasypus novemcinctus	ENSDNOG00000002180	1 retrocopy	retro_dnov_1479,
Homo sapiens	ENSG00000156697	1 retrocopy	retro_hsap_29,
Gorilla gorilla	ENSGGOG00000014930	1 retrocopy	retro_ggor_163,
Loxodonta africana	ENSLAFG00000016653	1 retrocopy	retro_lafr_110,
Myotis lucifugus	ENSMLUG00000001984	2 retrocopies	retro_mluc_1643, retro_mluc_308,
Macaca mulatta	ENSMMUG00000020700	1 retrocopy	retro_mmul_35,
Mus musculus	ENSMUSG00000063785	1 retrocopy	retro_mmus_261,
Nomascus leucogenys	ENSNLEG00000015258	1 retrocopy	retro_nleu_2091 ,
Procavia capensis	ENSPCAG00000006070	1 retrocopy	retro_pcap_127,
Pan troglodytes	ENSPTRG00000022262	1 retrocopy	retro_ptro_824,
Tarsius syrichta	ENSTSYG00000009415	1 retrocopy	retro_tsyr_2104,
Tursiops truncatus	ENSTTRG00000003794	1 retrocopy	retro_ttru_1687,