RetrogeneDB ID: retro_mluc_1643

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429876:1128164..1129392(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001984
• Aliases: None
• Description: None

Sequence

>retro_mluc_1643
ATGAGCGGGGTTCAGGCTGCAAAGAGCCTTCTGGCTCTAAGGGAACAGGAAGAACTAGAAGATTTGCCAAATGATTACCC
CTCAAGCACCAGTGAAGATGAATGGGCGGTAGTGGAGAGTGAAAGCATCAAAAACTTCTGGAAGCAATCAGGTCCCTTGA
TGGAAAGAATAGGCAGAAATTGGCTGAGAGATCTGAGGCTAGTCTGAAGGTGTCAGAATTCATGGTCAGTTCTGAAGGAT
CAGGAGAAAGGCTAGTCCTTTCAGATCTGCTTGAGCCCTTTAAAACTTCATCCTCATTGGCCACTGTGAAAAAGCAACTG
AATAGAGTCAAATCAAAGAAGACTGTGGAGCTACCCCTTAAGAAAGAAGAGGTTGAGGGGATCCACAGAGAAGTGGCATT
CAATAAAACCTCACAGACACTCTCCATATGGGACCCCATCGTTCAGAAGAACTGACAAGCAGAACAGCTGGTTTCCCCCC
TGATGAAGGAGCAGTCAGCCGTCGCTCCCATTGAGCATGTGCTCAATGGCTGGAAGGCAAGAACACCCCTGGAGCAGAAG
ATTTTTAACCTCCTTTGTAAGAACAAGCAGCCAGTGACAGACCCTTTACTGACTCTTGTGGAAAAGGCCTCTCTCAAAGC
CATGAGCCTGGAAGAGGCTAGATGCGCCGAGCAGAGCTTCAGAGGGCCCGGGCCCTGCAGTCTTACTATGAGGCCAGGGC
TCAAAGAGAGAAGAAAATCAAAAGCAAAAAGTATCACAGAGTTCTGAAGAAAGGAACGGCCAAGAAAGCCCTAAAAGAGT
TTGAGAAGCTGCGGAAGACCAATCCTGCTGCTGCGCTGGAAGAACTGGAAAAACTTGAAAAGGCCAGAATGATGGAGTGA
ATGAGCCTTAAGCACCAGAACAGTGGAAAATGGGCAAAGTCAAGGGCAATTATGGCCAAATATGACCTGGAGGCTTGCCA
GGCTATGCAGGATCAGTTGGTCAGGAACAAAGAACTAATGCAGAAAGTCCAGGTGGCCTCTGAGAGTGAGGAAGAGGAGG
GAGGTGAGGAAGAAGAGGGTGATCTCCTTGTCCCTGATTCGGTGAATGAGGCACACATGACTGCAGATGGACCGAACCCC
TGGATGGTCAGGAATCACTCTGGTGACGCAAAAGAGGCTGAAATCCAGAAGGACCCTGAACAACTTCCAGAGCCAATGGC
CAACGAGGCTTCTGAAAGTGAGGAAGAA

Alignment

ORF - retro_mluc_1643 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.48 %
• Parental protein coverage: 53.46 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MSGVRAAKSLLALREQEELEDLPNDYPLSTSEDEG-DGGGERKHQKLLEAISSLDGKNRRKLAERSEASL
          MSGV.AAKSLLALREQEELEDLPNDYP.STSEDE...G.GE.KHQKLLEAI.SLDGKNR.KLAERSEASL
Retrocopy MSGVQAAKSLLALREQEELEDLPNDYPSSTSEDEW<GGSGE*KHQKLLEAIRSLDGKNRQKLAERSEASL

Parental  KVSEFTVSSEGSGERLVLSDLLEPVKTSSSLATVKKQLNRVKSKKTVELPLNKEEVERIHREVAFNKTSQ
          KVSEF.VSSEGSGERLVLSDLLEP.KTSSSLATVKKQLNRVKSKKTVELPL.KEEVE.IHREVAFNKTSQ
Retrocopy KVSEFMVSSEGSGERLVLSDLLEPFKTSSSLATVKKQLNRVKSKKTVELPLKKEEVEGIHREVAFNKTSQ

Parental  TLSKWDPIVQKNRQAEQLVFPLMKEQSAFAPIEHVLNGWKARTPLEQEIFNLLCKNKQPVTDPLLTPVEK
          TLS.WDPIVQKN.QAEQLV.PLMKEQSA.APIEHVLNGWKARTPLEQ.IFNLLCKNKQPVTDPLLT.VEK
Retrocopy TLSIWDPIVQKN*QAEQLVSPLMKEQSAVAPIEHVLNGWKARTPLEQKIFNLLCKNKQPVTDPLLTLVEK

Parental  ASLKAMSLEEAK-MRRAELQRARALQSYYEARARREKKIKSKKYHRVLKKGKAKKALQEFENLRKTNPAA
          ASLKAMSLEEA..MRRAELQRARALQSYYEARA.REKKIKSKKYHRVLKKG.AKKAL.EFE.LRKTNPAA
Retrocopy ASLKAMSLEEAR<MRRAELQRARALQSYYEARAQREKKIKSKKYHRVLKKGTAKKALKEFEKLRKTNPAA

Parental  ALEELEKLEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQDQLARNKELTQKVQVASESEEEEG
          ALEELEKLEKARMME.MSLKHQNSGKWAKS.AIMAKYDLEA.QAMQDQL.RNKEL.QKVQVASESEEEEG
Retrocopy ALEELEKLEKARMME*MSLKHQNSGKWAKSRAIMAKYDLEACQAMQDQLVRNKELMQKVQVASESEEEEG

Parental  GEEEEGDLLVPDAVNEAHMTADGPNPWMVRNHSGDAKEAEIQKDPEQLPEPMANEASESEEE
          GEEEEGDLLVPD.VNEAHMTADGPNPWMVRNHSGDAKEAEIQKDPEQLPEPMANEASESEEE
Retrocopy GEEEEGDLLVPDSVNEAHMTADGPNPWMVRNHSGDAKEAEIQKDPEQLPEPMANEASESEEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1643 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000013671	2 retrocopies	retro_btau_133, retro_btau_1706,
Cavia porcellus	ENSCPOG00000014231	2 retrocopies	retro_cpor_1272, retro_cpor_242,
Dasypus novemcinctus	ENSDNOG00000002180	1 retrocopy	retro_dnov_1479,
Homo sapiens	ENSG00000156697	1 retrocopy	retro_hsap_29,
Gorilla gorilla	ENSGGOG00000014930	1 retrocopy	retro_ggor_163,
Loxodonta africana	ENSLAFG00000016653	1 retrocopy	retro_lafr_110,
Myotis lucifugus	ENSMLUG00000001984	2 retrocopies	retro_mluc_1643 , retro_mluc_308,
Macaca mulatta	ENSMMUG00000020700	1 retrocopy	retro_mmul_35,
Mus musculus	ENSMUSG00000063785	1 retrocopy	retro_mmus_261,
Nomascus leucogenys	ENSNLEG00000015258	1 retrocopy	retro_nleu_2091,
Procavia capensis	ENSPCAG00000006070	1 retrocopy	retro_pcap_127,
Pan troglodytes	ENSPTRG00000022262	1 retrocopy	retro_ptro_824,
Tarsius syrichta	ENSTSYG00000009415	1 retrocopy	retro_tsyr_2104,
Tursiops truncatus	ENSTTRG00000003794	1 retrocopy	retro_ttru_1687,