Parental gene:

ENSDNOG00000002180

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_4601:1096..22553(+)


>ENSDNOG00000002180
ATGAGCGCGATCAGGGCTGCGGAGAGCCTTCTGGCTTTGAGCCAACAGTTAGAACTAGAGGATTTGCCAAAAGACTACCC
TTTGAGCGCCAGTGAAGATGAGGGGGATAGTGATGGAGAAAGAAAACATCAGAAGCTTCTGGAAGCAATCAGTTTCCTTG
ATGGAAAGAATAGGCAGAAATTGGCTGAAAGATCAGAGGCTAGTCTGAAGGTATCAGAGTTCAATGTCAGTTCTGAAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCACAGAGAAGTGGCAT
TCAATAAAACCTCACAAGCCCTGTCCAAATGGGATCCTATCGTTCAGAAGAACCGGAAAGCAGAGCAGCTGGTTTTTCCT
TTAAAGAAGGAGCAGTCAGCCTTTGCTCCCATTGAACATGTGCTCAGTGGCTGGGAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATCACAAAGTTCTGAAGAAAGGAAAGGCCAAGAAAGCCCTAAAAGA
TTTTGAGAATTTACGGAAGGTTGATCCTAGTGCAGCATTAGAAGAACTGGAGAAAATCGAAAAGGCCAGAATGATGGAGC
GAATGAGCCTTAAGCACCAGAATAGTGGAAAATGGGCCAAGTCAAAGGCAATTATGGCCAAATATGACCTAGAGGCTCGC
CAAGCTATGCAGGAACAATTGGCCAAGAACAAAGAACTGACTCAGAAACTCCAGGTAGCATCTGAGAGTGAGGAAGAGGA
GGGAGGTGGAGAAGAACATGGACTCCTGGTCCCTGATGCAGTGAATGAAGTACAAATGAATACAGATGGACCAAATCCCT
GGATGCACAGAAGTTGGACCAGTGACGCAAAAGAGGCTGAAGTCCAGAAGAACCCTGAACAACTGTCAGAGCCTGTGGCC
AATAAGGATTCTGAAAGTGAGGGAGAGGAAAGACCAGCAGTGGCTGAAGAAGAGATTTTGTTGAAAGAATTTGCAGAAAG
GCGAGCCTTTAGAAAAAGGTCTGAGCTCAACCAGGATCCTGAGCCACTGGGTAGTCAAGAAACAAAAGATTCTAGCAGCC
AGGAGGTACTGTCTGAATTGAGAGCACTGTCTCAGAAACTCAACAAGGAAAACCACCAGTCCAGGAAGCCAAAAGGGAGC
TCAGCGGGGACTGTTCGCCTGGTTCAGAGAGAGGAGCCTGTCCAGGAAGAGTCCGAGGAGCCCCTGTTGTTGCAGAGGCC
AGAGAGAGTACATACTCAGGAGGAGCTAGAAGAGCTGGACAAAGAAGGGTGTTTTCAAAGTAAGGAGCTCCCCAGGCCTG
TGTTAGAAGGGCAGCCATTGGAAAGGATCACAAATTATCAGCCTGGTGCCCCTAAGGAGAAGAAAAAGAAGGAGCAAATG
ATTGATCTAAAGAACCTCCTGACCACAAAGTCTCCTTCCGTGAAGTCTTTGGCAGTTCCCACAACGATAGAGGAGATGGA
AGATAAAGAGGAGGCAGAGCAAAAGCAGATGATAAAGGAAGCTTTTGCTGGGGATGATGTCATTAGAGACTTCTTGAAAG
AAAAGAGGGAAGCTGTGGAGGCGAGTAAGCCCAAGGATATGGACCTGACACTGCCTGGCTGGGGCGAGTGGGGTGGCGCA
GGCCTAAAGCCCAGTGCCAAGAAAAGACGCCGGTTTCTCTTTAAAACCCCTGAGGGTCCTCCAAGAAAAGACAAGAATTT
GCCAAATGTGATTATCAATGAGAAGCGCAACATCCATGCAGCAGCTCATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGTCATGCAGAGAAACCCCAAACGACTCTCCATCCATCACAAACAGCTGAAGAAAAACTTAGTAGATT
GA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 26 .64 RPM
SRP012922_cerebellum 22 .27 RPM
SRP012922_heart 11 .83 RPM
SRP012922_kidney 14 .51 RPM
SRP012922_liver 7 .74 RPM
SRP012922_lung 41 .08 RPM
SRP012922_quadricep_muscle 27 .00 RPM
SRP012922_spleen 40 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000013671 ortholog_one2many 2 retrogenes
retro_btau_133, retro_btau_1706,
Cavia porcellus ENSCPOG00000014231 ortholog_one2one 2 retrogenes
retro_cpor_1272, retro_cpor_242,
Homo sapiens ENSG00000156697 ortholog_one2many 1 retrogene
retro_hsap_29,
Gorilla gorilla ENSGGOG00000014930 ortholog_one2many 1 retrogene
retro_ggor_163,
Loxodonta africana ENSLAFG00000016653 ortholog_one2many 1 retrogene
retro_lafr_110,
Myotis lucifugus ENSMLUG00000001984 ortholog_one2many 2 retrogenes
retro_mluc_1643, retro_mluc_308,
Macaca mulatta ENSMMUG00000020700 ortholog_one2many 1 retrogene
retro_mmul_35,
Mus musculus ENSMUSG00000063785 ortholog_one2many 1 retrogene
retro_mmus_261,
Nomascus leucogenys ENSNLEG00000015258 ortholog_one2one 1 retrogene
retro_nleu_2091,
Procavia capensis ENSPCAG00000006070 ortholog_one2one 1 retrogene
retro_pcap_127,
Pan troglodytes ENSPTRG00000022262 ortholog_one2one 1 retrogene
retro_ptro_824,
Tarsius syrichta ENSTSYG00000009415 ortholog_one2one 1 retrogene
retro_tsyr_2104,
Tursiops truncatus ENSTTRG00000003794 ortholog_one2one 1 retrogene
retro_ttru_1687,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1479 73.12 56.02
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSDNOG00000002180 retrocopies