RetrogeneDB ID: retro_mluc_308

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429810:4086060..4088343(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000005692
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001984
• Aliases: None
• Description: None

Sequence

>retro_mluc_308
ATACGGGCTGCAAAGAGCCTTCTGGCTCCAAGGGAACAGGAAGAACTAGAAGATTTGCCAAATGACTACCCCTCAAGCAC
CAGTGAAGATGAGGGGGACAGTGGTGGAGAGCGAAAGCATCAAAAGCTTCTGGAAGCAATCAGTTCCCTTGATGGAAAGA
ATAGGCGGAAATTGGCTGAGAGATCTGAGGCTAGTCTGAAGGTGTCAGAGTTCACGGTCAGTTCTAAAGGATCAGGAGAA
AGGCTAGTCCTTTCAGATCTGCTTGAACCTGTTAAAACTTCATCCTCATTGGCCACTGTGAAAAAGCAACTGAATAGAGT
CATATCAAAGAAGACTGTGGAGCTACCCCTTAACAAAGAAGAGGTTGAGCGGATCCACAGAGAAGTGGCATTCAATAAAA
CCTCACAGGCGCTCTCCAAATGGGATCCCATCGTTCAGAAGAACCGACAAGCAGAGCAGCTGGTTTTCCCCCTGATAAAG
GAGCAGTCAGCCTTCGCTCCCATGGAGCATGTGCTCAACGCCTGGAAGGCAAGAACACCCCTGGAGCAGGAGATTTTTAA
CCTCCTTTGTAAGAACAAGCAGCCAGTGACAGACCCTTTACTGACTCCTGTGGAAAAGGCCTCTCTCAAAGCCATGAGCC
TGGAAATGGCTAAGATGCGCCGAGCAGAGCTTCAGAGGGCCCGGACCCTGCAGTCTTACTATGAGGCCAGGGCTCGAAGA
GAGAAGAAAATCAAAAGCAAAAAGTATCACAGAGTTCTGAAGAAAGGAAAGGCCAAGAATTCCCTAAAAGAGTTTGAGAA
GCTGCGGAAGACCAATCCTGCTGCTGCACTGGAAGAACTGGAAAAACTCGAAAAGGCCAGAATGATGGAGCGAATGAGCC
TTAAGCACCAGAACAGTGGAAAATGGGCAAAGTCAAAGGCAGTTATGGCCAAATATGACCTGGAGGCTCGCCAGGCTATG
CAGGATCAGTTGGCCAGGAACAAAGAACTGACGCAGAAAGTCCAGGTGGCCTCTGAGAGTGAGGAAGAGGAGGGAGGTGA
AGAAGAGGTTGATCTCCTTGTCCCTGATGCAGTGAATGAGGCACACATGACTGCAGATGGACCGAATCCCTGGATGGTCA
GGAATCACTCTGATGACGCAAAAGAGGCTGAAATCCAAAAGGACTCTGAACAACTTCCAGAGCCCATGGCCAACGAGGCT
TCTGAGAGTGAGGAAGAAGAAAGACCAGTGGCAGAGGAAGAAATTTTGTTGAAAGAATTTAAGGAAAGTCAGTTACTTAG
GAAAATGTCGGGGCTCAACCAGGACACCAAGCCAGTGGGCAGACAAGAAACAGAAGATTCTAGCACCCAGGAGGTGCTAT
CCAAACTGAGAGGACTGTCTCAGAAACTCAACAAGGACAACCATCAGTGCAGGAAGCAAAACATGGGTTCAGTGAGGACT
GTTTTGTCCACCCAGAGAGAGGGACCTGCTGGGGAAGAAGAGGAGCCCCTGTTGCTACAGAGGCCGGAGAGAGCACAGAC
TCTGGAGGAGCTAAAGGAACTGAGCAAAGAAGGATGCTTTCAAAATGAGGAGCTTCCCAGACCTGCGTTAGAAGGGCAGC
AGGTGGAGAGGAATAATCAGCCTAGTGCTCCCAAGAAGAAAAGGAAGGAGCAAATGATTGACCTACAGAACATCTTAACC
ACAAAATCTCCTTCCATGAAGTCTTCGGCTGTCCCCACAATAGAGGAGTTGGAAGATGAACAAGAGAGAAAGCAAAAGCA
AATGATAAAGGAAGCTTTTGCTGGTGATGATGTCATCAGAGATTTCTTGAAGGAGAAGAGAGAAACAGTGGAGGCGAGTA
AGCCAAACGACGTGGACCTGACTCTGCCTGGCTGGGGCGAGTGGGGCGGTGTGGGCCTGAAGCCCAGTGCCAAGAAGAGA
CGCCGGTTTCTCATTAAAGCACCTGAAGGTCCTCCAAGAAAGGACAAGAATTTACCAAATGTGATTATCAATGAGAAGCG
AAACATCCATGCAGCAGCTCACCAGGTGCGGGTGCTTCCATATCCATTTACCCACCATCAGCAATTTGAGAGGACCATCC
AGACCCCTATAGGATCTACATGGAACACCCAGAGAGCCTCCCAAAAGCTGACTACACCCAAGGTTGTCACCAAGCCAGGA
CATATCATTAAGCCTATAAAAGCAGAGGATGTGGGCTACCGGTCTTCCTCACGGTCGGACCTCTCTGTCATACAGAGGAA
TCCAAAACAACTCTCCATACATCACAAAAAACAGCTGAAGAAA

Alignment

ORF - retro_mluc_308 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.45 %
• Parental protein coverage: 99.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VRAAKSLLALREQEELEDLPNDYPLSTSEDEGDGGGERKHQKLLEAISSLDGKNRRKLAERSEASLKVSE
          .RAAKSLLA.REQEELEDLPNDYP.STSEDEGD.GGERKHQKLLEAISSLDGKNRRKLAERSEASLKVSE
Retrocopy IRAAKSLLAPREQEELEDLPNDYPSSTSEDEGDSGGERKHQKLLEAISSLDGKNRRKLAERSEASLKVSE

Parental  FTVSSEGSGERLVLSDLLEPVKTSSSLATVKKQLNRVKSKKTVELPLNKEEVERIHREVAFNKTSQTLSK
          FTVSS.GSGERLVLSDLLEPVKTSSSLATVKKQLNRV.SKKTVELPLNKEEVERIHREVAFNKTSQ.LSK
Retrocopy FTVSSKGSGERLVLSDLLEPVKTSSSLATVKKQLNRVISKKTVELPLNKEEVERIHREVAFNKTSQALSK

Parental  WDPIVQKNRQAEQLVFPLMKEQSAFAPIEHVLNGWKARTPLEQEIFNLLCKNKQPVTDPLLTPVEKASLK
          WDPIVQKNRQAEQLVFPL.KEQSAFAP.EHVLN.WKARTPLEQEIFNLLCKNKQPVTDPLLTPVEKASLK
Retrocopy WDPIVQKNRQAEQLVFPLIKEQSAFAPMEHVLNAWKARTPLEQEIFNLLCKNKQPVTDPLLTPVEKASLK

Parental  AMSLEEAKMRRAELQRARALQSYYEARARREKKIKSKKYHRVLKKGKAKKALQEFENLRKTNPAAALEEL
          AMSLE.AKMRRAELQRAR.LQSYYEARARREKKIKSKKYHRVLKKGKAK..L.EFE.LRKTNPAAALEEL
Retrocopy AMSLEMAKMRRAELQRARTLQSYYEARARREKKIKSKKYHRVLKKGKAKNSLKEFEKLRKTNPAAALEEL

Parental  EKLEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQDQLARNKELTQKVQVASESEEEEGGEEEE
          EKLEKARMMERMSLKHQNSGKWAKSKA.MAKYDLEARQAMQDQLARNKELTQKVQVASESEEEEGGEEE.
Retrocopy EKLEKARMMERMSLKHQNSGKWAKSKAVMAKYDLEARQAMQDQLARNKELTQKVQVASESEEEEGGEEEV

Parental  GDLLVPDAVNEAHMTADGPNPWMVRNHSGDAKEAEIQKDPEQLPEPMANEASESEEEERPVAEEEILLKE
          .DLLVPDAVNEAHMTADGPNPWMVRNHS.DAKEAEIQKD.EQLPEPMANEASESEEEERPVAEEEILLKE
Retrocopy -DLLVPDAVNEAHMTADGPNPWMVRNHSDDAKEAEIQKDSEQLPEPMANEASESEEEERPVAEEEILLKE

Parental  FEERRSLRKKSGLNQDAKPVSRQETKADSSTQEVLSELRALSQKLNKDSHQCRKQNVGSARTVLSVQREE
          F.E...LRK.SGLNQD.KPV.RQET..DSSTQEVLS.LR.LSQKLNKD.HQCRKQN.GS.RTVLS.QRE.
Retrocopy FKESQLLRKMSGLNQDTKPVGRQETE-DSSTQEVLSKLRGLSQKLNKDNHQCRKQNMGSVRTVLSTQREG

Parental  PAGEEEEPPLLQRPERAQTLEELEELSKEGCFQNEELPRPALEEQQLERNNQPSAPKKKTKEQMIDLQNI
          PAGEEEEP.LLQRPERAQTLEEL.ELSKEGCFQNEELPRPALE.QQ.ERNNQPSAPKKK.KEQMIDLQNI
Retrocopy PAGEEEEPLLLQRPERAQTLEELKELSKEGCFQNEELPRPALEGQQVERNNQPSAPKKKRKEQMIDLQNI

Parental  LTTKSPSVKSLAVPTIEELEDEQEREQKQMIKEAFAGDDVIRDFLKEKREAVEASKPKDVDLTLPGWGEW
          LTTKSPS.KS.AVPTIEELEDEQER.QKQMIKEAFAGDDVIRDFLKEKRE.VEASKP.DVDLTLPGWGEW
Retrocopy LTTKSPSMKSSAVPTIEELEDEQERKQKQMIKEAFAGDDVIRDFLKEKRETVEASKPNDVDLTLPGWGEW

Parental  GGVGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIQAAAHQVRVLPYPFTHHQQFERTIQTPIG
          GGVGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNI.AAAHQVRVLPYPFTHHQQFERTIQTPIG
Retrocopy GGVGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHAAAHQVRVLPYPFTHHQQFERTIQTPIG

Parental  STWNTQRAFQKLTTPKVVTKPGHIIKPIKAEDVGYRSSSRSDLSVIQRNPKQLSIRHKKQLKK
          STWNTQRA.QKLTTPKVVTKPGHIIKPIKAEDVGYRSSSRSDLSVIQRNPKQLSI.HKKQLKK
Retrocopy STWNTQRASQKLTTPKVVTKPGHIIKPIKAEDVGYRSSSRSDLSVIQRNPKQLSIHHKKQLKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_308 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000013671	2 retrocopies	retro_btau_133, retro_btau_1706,
Cavia porcellus	ENSCPOG00000014231	2 retrocopies	retro_cpor_1272, retro_cpor_242,
Dasypus novemcinctus	ENSDNOG00000002180	1 retrocopy	retro_dnov_1479,
Homo sapiens	ENSG00000156697	1 retrocopy	retro_hsap_29,
Gorilla gorilla	ENSGGOG00000014930	1 retrocopy	retro_ggor_163,
Loxodonta africana	ENSLAFG00000016653	1 retrocopy	retro_lafr_110,
Myotis lucifugus	ENSMLUG00000001984	2 retrocopies	retro_mluc_1643, retro_mluc_308 ,
Macaca mulatta	ENSMMUG00000020700	1 retrocopy	retro_mmul_35,
Mus musculus	ENSMUSG00000063785	1 retrocopy	retro_mmus_261,
Nomascus leucogenys	ENSNLEG00000015258	1 retrocopy	retro_nleu_2091,
Procavia capensis	ENSPCAG00000006070	1 retrocopy	retro_pcap_127,
Pan troglodytes	ENSPTRG00000022262	1 retrocopy	retro_ptro_824,
Tarsius syrichta	ENSTSYG00000009415	1 retrocopy	retro_tsyr_2104,
Tursiops truncatus	ENSTTRG00000003794	1 retrocopy	retro_ttru_1687,