RetrogeneDB ID: retro_mputfur_976

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896983.1:4028968..4029437(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPS7
• Ensembl ID: ENSMPUG00000013928
• Aliases: None
• Description: mitochondrial ribosomal protein S7 [Source:HGNC Symbol;Acc:14499]

Sequence

>retro_mputfur_976
TTTGAAGACCCAGTCAGTAAATTCACCACTATGATTATGAAAGGAGGAAACAAAATACTGGCCAGATCCCTCGTGATGCA
GACTCTGGAAGCTGGAAAAGGGAAGGAGTTTGAGAAGTACAATGTTGCTTCTGCAGAGGAACAGGCAACCATCCAGCACA
ACCCCTTCACCAGCTTCCACCAAGTACTGAAGAACTATGAGCCTGTGATTGGGTTGGTACCCACCTTCAGAGGTGGCCAT
TTCTACCAAGACCCTATGTCACTAGATGATCGGGGTCATCGTTTTCCTGATAATGAAGTGGATGATTACTGAGTGCCGGG
AGAAGAAGCACTGGTGGATGCTGATGCTAGAGAAGCTGTCACATGAGCTGCTGGAGGCTTTTCACAAACAGGGCCCTGTG
GTCAAGAAGAAGCATGACATGCACAATATGGTGGAGGCCATCCATGCCCTGGCTCACTATTGCTGGTGG

Alignment

ORF - retro_mputfur_976 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.05 %
• Parental protein coverage: 64.88 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FEDPVISKFINMMMKGGNKVLARSLMTQTLEAVKRKQFEKYHAASAEEQATIERNPYTIFHQALKNCEPV
          FEDPV.SKF..M.MKGGNK.LARSL..QTLEA.K.K.FEKY..ASAEEQATI..NP.T.FHQ.LKN.EPV
Retrocopy FEDPV-SKFTTMIMKGGNKILARSLVMQTLEAGKGKEFEKYNVASAEEQATIQHNPFTSFHQVLKNYEPV

Parental  IGLVPILRGGHFYQVPVPLPARRRR-FLAMKWMLTECREKKHRRTLMPEKLSHELLEAFHNQGPVIKKKH
          IGLVP..RGGHFYQ.P..L..R..R.FL.MKWM.TECREKKH...LM.EKLSHELLEAFH.QGPV.KKKH
Retrocopy IGLVPTFRGGHFYQDPMSLDDRGHR>FLIMKWMITECREKKHWWMLMLEKLSHELLEAFHKQGPVVKKKH

Parental  DMHKMAEANRALAHYRWW
          DMH.M.EA..ALAHY.WW
Retrocopy DMHNMVEAIHALAHYCWW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_976 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_976 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000009287	1 retrocopy	retro_amel_1444,
Canis familiaris	ENSCAFG00000004752	5 retrocopies	retro_cfam_2020, retro_cfam_2197, retro_cfam_438, retro_cfam_443, retro_cfam_540,
Callithrix jacchus	ENSCJAG00000014458	2 retrocopies	retro_cjac_290, retro_cjac_3316,
Erinaceus europaeus	ENSEEUG00000015775	1 retrocopy	retro_eeur_212,
Felis catus	ENSFCAG00000028759	2 retrocopies	retro_fcat_2013, retro_fcat_424,
Loxodonta africana	ENSLAFG00000002873	1 retrocopy	retro_lafr_945,
Macropus eugenii	ENSMEUG00000012264	1 retrocopy	retro_meug_1826,
Mustela putorius furo	ENSMPUG00000013928	1 retrocopy	retro_mputfur_976 ,
Oryctolagus cuniculus	ENSOCUG00000017928	1 retrocopy	retro_ocun_609,
Procavia capensis	ENSPCAG00000015942	1 retrocopy	retro_pcap_327,
Pteropus vampyrus	ENSPVAG00000008433	3 retrocopies	retro_pvam_610, retro_pvam_615, retro_pvam_678,
Ictidomys tridecemlineatus	ENSSTOG00000015200	2 retrocopies	retro_itri_1805, retro_itri_461,