RetrogeneDB ID:

retro_pvam_615

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_4056:67358..67960(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPS7
Ensembl ID:ENSPVAG00000008433
Aliases:None
Description:mitochondrial ribosomal protein S7 [Source:HGNC Symbol;Acc:14499]


Retrocopy-Parental alignment summary:






>retro_pvam_615
AGCCACTATGGTCCTGAATACCAGATCCCCAGATTGACAAGGAATTTTACCACAAGCCCTTGGCCAAGTTGACTGAGAAG
TTTGACCAGGAGCTCAGGAAGACTCAGCTTATTAAAGCTGCCCCGGCAATGAAAACAAATTCGATGTTTGAAGACCCATT
GATCAGTAAATTCACCAACATGATGATGAAAGGAGGAAACAAAGTACTGGCCAGATCCCTCAGGACACAGACTCTAGAAG
CTGTGAAAAGGAAGCAGTTTGAGAAATACCATGCTTCTTCTGCAGAGGAACGTAATCCTTACACCATCTTCCACCAAGCA
TTGAAAAACTGTGAGCCTATGATTGGGCTGGTACCCATCCCCAAAGGTGGCCATTTCTACTCGGTCCCTGTGCTGCTAGC
TGACTGGCGTCGCCACTTCCTGGACTTGAAGTGGATGATCACGGAGTGCAGGGAGAAGCAGCACCAGCGGAGGCTGATTC
TAGAGAAGTTGTCCCATGAGCTGCTGCAAGCTTTTTAAAACCAAGGCCCTGCGATCAAAAAGAAGCATGACATACACAAG
AAGGCTGAGGCCAACCGTGCCCTGGCCCATTACCACTGGTGG

ORF - retro_pvam_615 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.3 %
Parental protein coverage: 85.95 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalSRYGPEYR-DPQIDKEYYRKPLAELTEEEKFDRELRKTQLIKAAPAMKTSSVFEDPLISKFTNMMMKGGN
S.YGPEY..DPQIDKE.Y.KPLA.LTE..KFD.ELRKTQLIKAAPAMKT.S.FEDPLISKFTNMMMKGGN
RetrocopySHYGPEYQ<DPQIDKEFYHKPLAKLTE--KFDQELRKTQLIKAAPAMKTNSMFEDPLISKFTNMMMKGGN
ParentalKVLARSLMTQTLEAVKRKQFEKYHAASAEERETIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVP
KVLARSL.TQTLEAVKRKQFEKYH.AS..E....ERNPYTIFHQALKNCEP.IGLVPI.KGGHFY.VPV.
RetrocopyKVLARSLRTQTLEAVKRKQFEKYH-ASSAE----ERNPYTIFHQALKNCEPMIGLVPIPKGGHFYSVPVL
ParentalLADRRRRFLAMKWMITECREKKHRRMLMPEKLSHELLQAFHNQGPVIKKKHDMHKMAEANRALAHYRWW
LAD.RR.FL..KWMITECREK.H.R.L..EKLSHELLQAF.NQGP.IKKKHD.HK.AEANRALAHY.WW
RetrocopyLADWRRHFLDLKWMITECREKQHQRRLILEKLSHELLQAF*NQGPAIKKKHDIHKKAEANRALAHYHWW

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide