Parental gene: | ENSCJAG00000014458 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:124492001..124496462(+) |
>ENSCJAG00000014458
NTGCCCCCCGCAGTGAAGGTTTCCCGAGGTTGGTCGGGCCTGCGCCGATCGTGCGGCGGCATTCTGCAGCATCAGGGTGA
GAGGCTAACTCAGGTGAGGTGGAGCCGCTATAGTGCTGAATTCAAGGATCCCCTGATAGACAAGGAACATTATCGCAAGC
CTGTGGAGAAGCTAACTGAGGAGGAAAAGTATGATCGGGAACTCAAGAAGACTCAGCTCATCAAAGCTGCTCCAGCAGCG
AAAACAAGTTCTGTGTTTGAAGACCCAGTCGTCAGTAAATTCACCAACATGATGATGAAAGGAGGAAACAAAATACTGGC
CAGATCCCTCATGACTCAGACTCTGGAATCTGTGAAAAGGAAGCAGTTTGAGAAGTACCATGCCGCTTCTGCAGAGGAAC
AGGCAACCATTGAACGGAACCCCTACATCATCTTCCACCAAGCACTGAGAAACTGTGAACCTATGATTGGGCTGGTACCG
ATCCTCAGAGGAGGCCGTATATATCAGGTTCCTACATCCCTACCAGACCGACGTCGCCGCTTCCTGGCCATGAAGTGGAT
GATCACTGAGTGCCGGGAGAACAAGCATCGGCGGATGCTGATGCCGGAGAAACTGTCACATGAGCTGCTGGAGGCTTTTC
ATAACCAGGGCCCCGTGATCAAGAGGAAGCACGACATGCACAAGATGGCTGAGGCCAACCGTGCCCTGGCCCACTACCGC
TGGTGGTAG
NTGCCCCCCGCAGTGAAGGTTTCCCGAGGTTGGTCGGGCCTGCGCCGATCGTGCGGCGGCATTCTGCAGCATCAGGGTGA
GAGGCTAACTCAGGTGAGGTGGAGCCGCTATAGTGCTGAATTCAAGGATCCCCTGATAGACAAGGAACATTATCGCAAGC
CTGTGGAGAAGCTAACTGAGGAGGAAAAGTATGATCGGGAACTCAAGAAGACTCAGCTCATCAAAGCTGCTCCAGCAGCG
AAAACAAGTTCTGTGTTTGAAGACCCAGTCGTCAGTAAATTCACCAACATGATGATGAAAGGAGGAAACAAAATACTGGC
CAGATCCCTCATGACTCAGACTCTGGAATCTGTGAAAAGGAAGCAGTTTGAGAAGTACCATGCCGCTTCTGCAGAGGAAC
AGGCAACCATTGAACGGAACCCCTACATCATCTTCCACCAAGCACTGAGAAACTGTGAACCTATGATTGGGCTGGTACCG
ATCCTCAGAGGAGGCCGTATATATCAGGTTCCTACATCCCTACCAGACCGACGTCGCCGCTTCCTGGCCATGAAGTGGAT
GATCACTGAGTGCCGGGAGAACAAGCATCGGCGGATGCTGATGCCGGAGAAACTGTCACATGAGCTGCTGGAGGCTTTTC
ATAACCAGGGCCCCGTGATCAAGAGGAAGCACGACATGCACAAGATGGCTGAGGCCAACCGTGCCCTGGCCCACTACCGC
TGGTGGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 7 .06 RPM |
| SRP051959_skeletal_muscle | 24 .04 RPM |
| SRP051959_lymph_node | 6 .28 RPM |
| SRP051959_lung | 7 .22 RPM |
| SRP051959_liver | 10 .01 RPM |
| SRP051959_kidney | 11 .38 RPM |
| SRP051959_heart | 10 .84 RPM |
| SRP051959_colon | 6 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009287 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000004752 | ortholog_one2many | 5 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000015775 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000028759 | ortholog_one2many | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000002873 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012264 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013928 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000017928 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000015942 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000008433 | ortholog_one2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000015200 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_290 | 95.05 | 91.74 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3316 | 86.18 | 89.26 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000014458 retrocopies