Parental gene: | MRPS7, ENSCAFG00000004752 |
| Aliases: | None |
| Description: | mitochondrial ribosomal protein S7 [Source:HGNC Symbol;Acc:14499] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 9:5231979..5235158(-) |
>ENSCAFG00000004752
ATGGCGGCCCCCGCGGTGAAGGCTGCGGGAGGGTGGCCGATCCTGGCGCTGAGCCTGCGGAGTGGTGTCCGGCGGCTACC
AGGGCTAACCCAGGTGAGGTGGAGCCGCTATGGTCCCGAATACAAGGATCCACGGATTGACAAGGAGTATTACCGTAAGC
CGTTGGCAGAGTTGACGGAGGAAGAGAAGTATGAACAGGAACTCAGGAAGACTCAGCTTATCAAAGCTGCTCCAGCAGCG
AAAACAAGCTCTGTGTTTGAAGACCCCGTGATCAGTAAATTCACCAACATGATGATGAAAGGAGGAAACAAAGTACTGGC
CAGATCCCTCATGATGCAGACTCTTGAAGCTGTGAAAAGGAAGCAGTTTGAGAAGTACCATGCTGCTTCTGCAGAGGAAC
AGGCCACCATCGAACGCAACCCCTATGTCATCTTCCACCAAGCACTGCAAAACTGTGAACCCGTGATAGGGCTGGTACCC
ATCCTCAGAGGGGGCCATTTTTATCAGGTCCCTGTGCCACTTGCTGATCGGCGTCGTCGCTTCTTGGCCATGAAGTGGAT
GATTAAGGAGTGCAGGGAGAAGAAGCACCGGCGGATGCTGATGCCAGAGAAGTTGTCACACGAGCTGCTGGAGGCTTTTC
ACAACCAGGGCCCTGTGATCAAGAAGAAGCATGACATGCACAAGATGGCTGAGGCCAACCGTGCCCTGGCTCACTACCGC
TGGTGGTAG
ATGGCGGCCCCCGCGGTGAAGGCTGCGGGAGGGTGGCCGATCCTGGCGCTGAGCCTGCGGAGTGGTGTCCGGCGGCTACC
AGGGCTAACCCAGGTGAGGTGGAGCCGCTATGGTCCCGAATACAAGGATCCACGGATTGACAAGGAGTATTACCGTAAGC
CGTTGGCAGAGTTGACGGAGGAAGAGAAGTATGAACAGGAACTCAGGAAGACTCAGCTTATCAAAGCTGCTCCAGCAGCG
AAAACAAGCTCTGTGTTTGAAGACCCCGTGATCAGTAAATTCACCAACATGATGATGAAAGGAGGAAACAAAGTACTGGC
CAGATCCCTCATGATGCAGACTCTTGAAGCTGTGAAAAGGAAGCAGTTTGAGAAGTACCATGCTGCTTCTGCAGAGGAAC
AGGCCACCATCGAACGCAACCCCTATGTCATCTTCCACCAAGCACTGCAAAACTGTGAACCCGTGATAGGGCTGGTACCC
ATCCTCAGAGGGGGCCATTTTTATCAGGTCCCTGTGCCACTTGCTGATCGGCGTCGTCGCTTCTTGGCCATGAAGTGGAT
GATTAAGGAGTGCAGGGAGAAGAAGCACCGGCGGATGCTGATGCCAGAGAAGTTGTCACACGAGCTGCTGGAGGCTTTTC
ACAACCAGGGCCCTGTGATCAAGAAGAAGCATGACATGCACAAGATGGCTGAGGCCAACCGTGCCCTGGCTCACTACCGC
TGGTGGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 18 .82 RPM |
| SRP017611_kidney | 40 .15 RPM |
| SRP017611_liver | 11 .67 RPM |
| SRP012049_cerebellum | 32 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009287 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014458 | ortholog_one2many | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000015775 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000028759 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000002873 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012264 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013928 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000017928 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000015942 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000008433 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000015200 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_438 | 65.93 | 92.56 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_443 | 66.37 | 92.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_540 | 80.83 | 97.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_2020 | 72.78 | 64.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_2197 | 74.85 | 66.94 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000004752 retrocopies