RetrogeneDB ID: retro_mluc_459

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02066549:5434..5883(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026321
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RND2
• Ensembl ID: ENSMLUG00000004129
• Aliases: None
• Description: None

Sequence

>retro_mluc_459
ATGGAGGGGCAGAGTGGCCACTGCAAGATTGTGGTCGTGAGGGACACGAAGTGTGGCAAGATGACACTGCTGCAGGTGTT
TGCAAGGACATCTAGCCAGGGAGTTACGTCCCTCCTGGTTTGAAGACTGCACTGTAAGCTTTGAGATAGACAAGTGTGCA
TTGAGTTCAACATGTGGGACACTTTGGGTTCTTCCTACTGTGATAACGTCTGGTACCTGGCGTTTCCTGATTCAGACTCT
GTGTTCATCTGCTTTGACGTTAGCCGACCAGAAATGCTGGACAGTGCCCTTAGAAAGTGGCAAAGGGAGACTCAGGAGTT
TTGCCCCGATGCCAAGGTTGTGCTGGTTGGCTGTAAACTGGATATGCAGATGACCTGGCCACGCTGAGGGACATATCCAA
GCAAAAGCTTATCCCTGTTACACATGAGCAGGGCACTGTGCTGGCCAGG

Alignment

ORF - retro_mluc_459 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.9 %
• Parental protein coverage: 65.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MEGQSGRCKIVVVGDAECGKTALLQVFANERL-PRSYVP-TVFENYTASFEIDKRR-IELNMWDTSGSSY
          MEGQSG.CKIVVV.D..CGK..LLQVFA.....P.SYVP...FE..T.SFEIDK...IE.NMWDT.GSSY
Retrocopy MEGQSGHCKIVVVRDTKCGKMTLLQVFARTSS<PGSYVP<SWFEDCTVSFEIDKCA<IEFNMWDTLGSSY

Parental  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR-TDLATLRELSKQ
          .DNV..LA.PDSD.V.ICFD.SRPE.LDS.L.KWQ.ETQEFCP.AKVVLVGCKLDM...DLATLR..SKQ
Retrocopy CDNVWYLAFPDSDSVFICFDVSRPEMLDSALRKWQRETQEFCPDAKVVLVGCKLDMQ<DDLATLRDISKQ

Parental  RLIPVTHEQGTVLAK
          .LIPVTHEQGTVLA.
Retrocopy KLIPVTHEQGTVLAR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_459 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000013018	1 retrocopy	retro_cjac_3930,
Myotis lucifugus	ENSMLUG00000004129	4 retrocopies	retro_mluc_1125, retro_mluc_1356, retro_mluc_2145, retro_mluc_459 ,
Myotis lucifugus	ENSMLUG00000011602	1 retrocopy	retro_mluc_1705,
Myotis lucifugus	ENSMLUG00000013911	6 retrocopies	retro_mluc_108, retro_mluc_193, retro_mluc_1976, retro_mluc_2553, retro_mluc_2554, retro_mluc_2555,
Mus musculus	ENSMUSG00000001313	1 retrocopy	retro_mmus_3087,