RetrogeneDB ID: retro_mluc_1705

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429888:1155251..1155586(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RHOD
• Ensembl ID: ENSMLUG00000011602
• Aliases: None
• Description: None

Sequence

>retro_mluc_1705
TACTCTGAGTCCAAGCCACCGGCCCATGACTGCACCTTCAACCAGTGGTACTCGAAGGTGACTCACTTCTGCAAGGAGGT
GCCCATCATTCTCACGGGCTGGAAGACTGGCCTGCACAAGGACAAGTCGCAGGTGAAGAAGCTGCAGAAAACTGGTTTGG
AGCCTGTGACCTACCCCAGAGGCCAAGAGATGGCGAAGGTCATGCCCGCAGGGGATACCTGAACTGCTCAGCCCGGCTCC
GCGAAAATGTCTTCCAGTAAGTGGCCGAGGTGGCTGTCAGCAGCCGCAGTAGCAACTAACAGCAGCGGGTGGCCTGGAAC
TTCAGCGTGGAGACC

Alignment

ORF - retro_mluc_1705 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.17 %
• Parental protein coverage: 68.05 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FDVTNPHSFENIFNRWYPEVNHFCKEVPIILVGCKTDLRKDRSLVKKLWKNKLEPVTYHRGQEMARSVGA
          .....P......FN.WY..V.HFCKEVPIIL.G.KT.L.KD.S.VKKL.K..LEPVTY.RGQEMA....A
Retrocopy YSESKPPAHDCTFNQWYSKVTHFCKEVPIILTGWKTGLHKDKSQVKKLQKTGLEPVTYPRGQEMAKVMPA

Parental  -VAYLECSARLQENVHAVFQEAVKVALSSRSRNYWRRITRSFCVLT
          ...YL.CSARL.ENV...FQ....VA.SSRS.N...R....F.V.T
Retrocopy <RGYLNCSARLRENV---FQ*VAEVAVSSRSSN*QQRVAWNFSVET

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1705 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004129	4 retrocopies	retro_mluc_1125, retro_mluc_1356, retro_mluc_2145, retro_mluc_459,
Myotis lucifugus	ENSMLUG00000011602	1 retrocopy	retro_mluc_1705 ,
Myotis lucifugus	ENSMLUG00000013911	6 retrocopies	retro_mluc_108, retro_mluc_193, retro_mluc_1976, retro_mluc_2553, retro_mluc_2554, retro_mluc_2555,