RetrogeneDB ID: retro_mluc_1125

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429796:9651489..9652181(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000002600
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RND2
• Ensembl ID: ENSMLUG00000004129
• Aliases: None
• Description: None

Sequence

>retro_mluc_1125
ATGGAGGGGCAGAGCGGCCGCAGCAAGATCGTGGTGGTGGGGGACTCTGAGTGCGAGTGCGGCAACACGGCGTTGCTGCA
GGTGTTCTCCAAGGACGCCTATCCCGGGAGTTATGTCCCCACCTTGTTTGAGAACTACACCGCCAGCTTTGAGATAGACA
AGCGCTGCATTGAGCTCAACATGTGGGACACTTCAGGTTCCTCTTACTATGATAATGTCCGGCCCTTCACCTATCCTGAA
TCGGACACTGTGCTCATCTGCTTAGACATCAGCCGACCAGAAACACTGGACAGTGTCCTCAAGAAGTGGCAAGGGGAGAC
TCAGGAGTTTTGCCCCAATGCCAAGGTGGTGCTGGTTGGCTGTAAGCTGGACATGCGGACCGACCTGGCCACACTGAGGG
AGCTGTCCAAGCAGAGGCTGATCCCTGTTACACATGAGCAGGGCACTGTGCTGGCCAAGCAGGTGGGGGCCATGTCCTAC
GTGGAGTGCTCCTCCCGGTCCTCTGAGCGCAGCGTCAGGGATGTCTTCCACGAGACCACAGTGGCCTCCCTTGGCTGTGG
CCATAGGCAGCTGCGCCGTACTGACTCATGCCGGGTACTGCAGCGATCCACTCAGCTGGCAGGAAGGCCAGACGGGGGAA
TGGGAACGAAGGCGAGATACACAAGGATCGAGCCAAGAGTTGCAACCTCATG

Alignment

ORF - retro_mluc_1125 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.22 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MEGQSGRCKIVVVGDAEC--GKTALLQVFANERLPRSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY
          MEGQSGR.KIVVVGD.EC..G.TALLQVF.....P.SYVPT.FENYTASFEIDKR.IELNMWDTSGSSYY
Retrocopy MEGQSGRSKIVVVGDSECECGNTALLQVFSKDAYPGSYVPTLFENYTASFEIDKRCIELNMWDTSGSSYY

Parental  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRL
          DNVRP..YP.SD.VLIC.DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRL
Retrocopy DNVRPFTYPESDTVLICLDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRL

Parental  IPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHRQLRRTDSRRGLQRSTQLAGRP
          IPVTHEQGTVLAKQVGA.SYVECSSRSSERSVRDVFH..TVASLG.GHRQLRRTDS.R.LQRSTQLAGRP
Retrocopy IPVTHEQGTVLAKQVGAMSYVECSSRSSERSVRDVFHETTVASLGCGHRQLRRTDSCRVLQRSTQLAGRP

Parental  D-RGNGNEGEIHKDRAKSCNLM
          D.RGNGNEGEIHKDRAKSCNLM
Retrocopy D<RGNGNEGEIHKDRAKSCNLM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1125 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000013018	1 retrocopy	retro_cjac_3930,
Myotis lucifugus	ENSMLUG00000004129	4 retrocopies	retro_mluc_1125 , retro_mluc_1356, retro_mluc_2145, retro_mluc_459,
Myotis lucifugus	ENSMLUG00000011602	1 retrocopy	retro_mluc_1705,
Myotis lucifugus	ENSMLUG00000013911	6 retrocopies	retro_mluc_108, retro_mluc_193, retro_mluc_1976, retro_mluc_2553, retro_mluc_2554, retro_mluc_2555,
Mus musculus	ENSMUSG00000001313	1 retrocopy	retro_mmus_3087,