RetrogeneDB ID: retro_mluc_1356

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429827:1569326..1569744(+)
• Located in intron of: ENSMLUG00000010004

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RND2
• Ensembl ID: ENSMLUG00000004129
• Aliases: None
• Description: None

Sequence

>retro_mluc_1356
ATGTTGGGGCAGACCTGCTGCTGCGCCATCATGTTGGGGGATTTGGGGAGTGTGGCAAGACGGTGCTCCTTCGGGTGTTT
GCCAAGGACACCTACCCTGGGAGTTATGTCCCCACCATGTTTGAGAACTACACTGTGAGTTTTGAGATAGACAAGTGCGC
ATTGAGCTCAACTTGTGGGATACTTCCGGTTCCTCTTACTGTGATATCGTCTGGCCCTGGCTTCTCCTGATTCAGACGCG
GTGCTCATCTGCTTCCACAGCCAACCAGAAACACTGGACAGTGTCCTCAAGAAGTGACAAGGAGACTCAGGAATTTTGCC
CCAGTGCCAAGGTTGTGCTGGTTGGCTGTAAACTGGACGTGTGGACTGACCTGACCACACTGAGGAAGCTGTCCAATCAG
TGGCTTATCTCTTACACA

Alignment

ORF - retro_mluc_1356 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.03 %
• Parental protein coverage: 62.01 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MEGQSGRCKIV-VVGDAECGKTALLQVFANERLPRSYVPTVFENYTASFEIDK-RRIELNMWDTSGSSYY
          M.GQ...C.I..V.G..ECGKT.LL.VFA....P.SYVPT.FENYT.SFEIDK..RIELN.WDTSGSSY.
Retrocopy MLGQTCCCAIM<VGGFGECGKTVLLRVFAKDTYPGSYVPTMFENYTVSFEIDK<VRIELNLWDTSGSSYC

Parental  DNVRP-LAYPDSDAVLICFDISRPETLDSVLKKWQGET-QEFCP-NAKVVLVGCKLDMRTDLATLRELSK
          D.V.P.LA.PDSDAVLICF..S.PETLDSVLKK.QG.....F.P..AKVVLVGCKLD..TDL.TLR.LS.
Retrocopy DIVWP<LASPDSDAVLICFH-SQPETLDSVLKK*QGDS<RNFAP<SAKVVLVGCKLDVWTDLTTLRKLSN

Parental  QRLIPVT
          Q.LI..T
Retrocopy QWLISYT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1356 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000013018	1 retrocopy	retro_cjac_3930,
Myotis lucifugus	ENSMLUG00000004129	4 retrocopies	retro_mluc_1125, retro_mluc_1356 , retro_mluc_2145, retro_mluc_459,
Myotis lucifugus	ENSMLUG00000011602	1 retrocopy	retro_mluc_1705,
Myotis lucifugus	ENSMLUG00000013911	6 retrocopies	retro_mluc_108, retro_mluc_193, retro_mluc_1976, retro_mluc_2553, retro_mluc_2554, retro_mluc_2555,
Mus musculus	ENSMUSG00000001313	1 retrocopy	retro_mmus_3087,