RetrogeneDB ID:

retro_mluc_387

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430233:397446..399057(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000024634
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000005228
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_387
ATGGTGCTCACCAGCTTTTTACCTGCAGCTACTCAGCACTCTCAGGACCAGCTTGAGGCTGAAGAAAAGGCAAGATCCCA
GAGATCACGGCAGACCTCACTGGTCTGCTCCCGAAGAGAACCTCCCCCATACGGGTACCGGCAAGGCTGGATACCTCGGT
TATTAGAGGATTTTGGAGATGGAGGTGCTTTCCCAGAGATCCATGTGGCCCAGTATCCACTGGATATGGGACGAAAGAAA
AAAATGTCAAATACCCTGGCCATTCAGGTGGATGCTGAAGGAAAAATTAAATATGATGCCATTGCTCGGCAAGGACAGTC
AAAAGACAAGGTCATTTATAGCAAGTACACTGACCTGGTTCCCAAGGAGGTGATGAATGCAGACGACCCAGACCTGCAAA
GACCTGATGAAGAAGCTATTAAAGAGATAACAGAAAAGACAAGGGTGGCCTTAGAAAAATCTGTATCACAGAAGGTTGCT
GCGGCCATGCCAGCTCGAGCGGCTGATAAACTGGCTCCTGCTCAGTATATCCGATACACGCCATCGCAGCAAGGAGTGGC
TTTCAACTCTGGGGCAAAACAGAGGGTTATTCATATGGTGGAAATGCAGAGAGATCCAATGGAACCTCCAAGGTTCAAGA
TTAATGAGAAAATTCCCCGAGGACCACCTTCTCCTCCCGCACCTGTCATGCATTCTCCCAGCCGAAAGATGACTGTGAAG
GAGCAACAAGAGTGGAAGATTCCTCCGTGTATTTCAAACTGGAAAAATGCAAAGGGCTATACAGTTCCATTAGACAAACG
TCTGGCCGCTGATGGAAGAGGATTGCAGACAGTTCACATCAATGAAAATTTTGCTAAGCTGGCCGAAGCCCTCTACATTG
CTGATTGGAAGGCTCGTGAAGCCGTGGAAATGCGTGCCCAAGTAGAGAGAAAGATGGCTCAGAAAGAAAAAGAGAAACAT
GAAGAGAAACTGAGAGAAATGGCCCAGAAAGCTAGGGAGAGAAGAGCTGGGATCAAAACCCATGTGGAAAAAGAGGATGG
GGAGGCATGTGAGAGGGATGAAATTCGGCACGACAGGCGGAAAGAGAGACAGCATGACCGGAACCTTTCCAGGGCAGCGC
CCGATAAGAGGTCGAAACGGCAGAGAAATGAAAATCGAGATATCAGTGAGGTCATTGCTCTTGGTGTGCCCAATCCCCGG
ACTTCCAATGAAGTTCAATATGACCAAAGGCTGTTCAACCAATCCAAGGGCATGGACAGTGGTTTTGCAGGTGGAGAAGA
TGAAATTTACAATGTGTATGATCGAGCCTGGAGAGGTGGTAAAGATATGGCCCAGAATATTTACAGGCCCAGTAAAAATC
TGGATAAGGACATGTATGGTGATGATCTAGAAGCCAGAATGAAGACCAACAGATTCGTTCCCGATAAGGAGTTTTCTGGT
TCAGACCGTAGGACAAGAGGTAGAGAAGGACCAGTTCAGTTTGAGGAAGATCCTTTTGGTTTGGACAAGTTCCTGGAAGA
AGCCAAACAGCACGGTGGCTCTAAAAGACCCTCAGATAGCAGCCGCCCTAAGGAACATGAACATGAAGGCAAAAAGAGGA
GGAAGGAATAG

ORF - retro_mluc_387 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.83 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGDGGAFPEIHVA
M.LTSFLPA.TQ.SQDQLEAEEKARSQRSRQTSLV.SRREPPPYGYR.GWIPRLLEDFGDGGAFPEIHVA
RetrocopyMVLTSFLPAATQHSQDQLEAEEKARSQRSRQTSLVCSRREPPPYGYRQGWIPRLLEDFGDGGAFPEIHVA
ParentalQYPLDMGRKKKMSNALAIQVDAEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADDPDLQRPDEEAI
QYPLDMGRKKKMSN.LAIQVDAEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADDPDLQRPDEEAI
RetrocopyQYPLDMGRKKKMSNTLAIQVDAEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADDPDLQRPDEEAI
ParentalKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPP
KEITEKTRVALEKSVSQKVAAAMP.RAADKLAPAQYIRYTPSQQGVAFNSGAKQRVI.MVEMQ.DPMEPP
RetrocopyKEITEKTRVALEKSVSQKVAAAMPARAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIHMVEMQRDPMEPP
ParentalRFKINKKIPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHI
RFKIN.KIPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYT.PLDKRLAADGRGLQTVHI
RetrocopyRFKINEKIPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTVPLDKRLAADGRGLQTVHI
ParentalNENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEAR
NENFAKLAEALYIAD.KAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEA.
RetrocopyNENFAKLAEALYIADWKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEAC
ParentalERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
ERDEIRHDRRKERQHDRNLSRAAPDKRSK.QRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
RetrocopyERDEIRHDRRKERQHDRNLSRAAPDKRSKRQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDS
ParentalGFAGGEDEIYNVYDQAWRGGKDMAQNIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSGSDRRQRGREG
GFAGGEDEIYNVYD.AWRGGKDMAQNIYRPSKNLDKDMYGDDLEAR.KTNRFVPDKEFSGSDRR.RGREG
RetrocopyGFAGGEDEIYNVYDRAWRGGKDMAQNIYRPSKNLDKDMYGDDLEARMKTNRFVPDKEFSGSDRRTRGREG
ParentalPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE
PVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE
RetrocopyPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEGKKRRKE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_387 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 33 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000039762 retrocopies
retro_amel_163, retro_amel_912,
Canis familiaris ENSCAFG000000304091 retrocopy
retro_cfam_195,
Callithrix jacchus ENSCJAG000000169472 retrocopies
retro_cjac_2932, retro_cjac_576,
Dipodomys ordii ENSDORG000000123803 retrocopies
retro_dord_693, retro_dord_781, retro_dord_782,
Felis catus ENSFCAG000000016371 retrocopy
retro_fcat_635,
Homo sapiens ENSG000001006031 retrocopy
retro_hsap_174,
Gorilla gorilla ENSGGOG000000260161 retrocopy
retro_ggor_257,
Loxodonta africana ENSLAFG000000034822 retrocopies
retro_lafr_474, retro_lafr_787,
Myotis lucifugus ENSMLUG00000005228 2 retrocopies
retro_mluc_387 , retro_mluc_805,
Monodelphis domestica ENSMODG000000052521 retrocopy
retro_mdom_1841,
Mustela putorius furoENSMPUG000000087241 retrocopy
retro_mputfur_551,
Mus musculus ENSMUSG000000210392 retrocopies
retro_mmus_1022, retro_mmus_387,
Nomascus leucogenys ENSNLEG000000167711 retrocopy
retro_nleu_982,
Otolemur garnettii ENSOGAG000000298251 retrocopy
retro_ogar_1404,
Ochotona princeps ENSOPRG000000075681 retrocopy
retro_opri_737,
Pongo abelii ENSPPYG000000060311 retrocopy
retro_pabe_454,
Pan troglodytes ENSPTRG000000065871 retrocopy
retro_ptro_165,
Sorex araneus ENSSARG000000022793 retrocopies
retro_sara_403, retro_sara_568, retro_sara_727,
Tupaia belangeri ENSTBEG000000140743 retrocopies
retro_tbel_2575, retro_tbel_2927, retro_tbel_3536,
Taeniopygia guttata ENSTGUG000000123402 retrocopies
retro_tgut_15, retro_tgut_30,
Tarsius syrichta ENSTSYG000000109511 retrocopy
retro_tsyr_1871,




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