Parental gene:

ENSCAFG00000030409

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:8:50479400..50507704(-)


>ENSCAFG00000030409
ATCTTTGCTTATAGCTTTTTACCTGCACCTACTCAGCTATCTCAGGACCAGCTTGAGGCTGAAGAAAAAGCAAGATCCCA
GAGATCAAGACAGACCTCACTGGTCTCATCCCGAAGAGAACCTCCCCCATATGGGTACAGGAAAGGCTGGATACCTCGAT
TATTAGAGGATTTTGGAGATGGAGGTGCTTTTCCAGAGATCCATGTGGCCCAGTATCCACTGGATATGGGACGAAAGAAA
AAAATGTCAAATGCATTGGCCATTCAGGTGGATGCTGAAGGAAAAATTAAATATGATGCAATTGCTCGGCAAGGACAGTC
AAAAGACAAGGTCATTTATAGCAAGTATACTGACCTGGTTCCCAAGGAAGTCATGAATGCAGATGATCCAGATCTGCAAA
GACCTGATGAAGAAGCCATTAAAGAGATAACAGAAAAGACAAGAGTAGCCTTAGAAAAATCTGTATCACAGAAGGTTGCT
GCAGCCATGCCAGTTCGAGCTGCTGATAAACTGGCTCCTGCTCAGTATATTCGATACACACCATCTCAGCAAGGAGTGGC
TTTCAACTCTGGAGCTAAACAGAGAGTTATTCGGATGGTAGAAATGCAGAAAGATCCAATGGAGCCTCCAAGATTCAAGA
TTAATAAGAAAATTCCCCGAGGACCACCTTCTCCTCCTGCACCTGTCATGCATTCTCCTAGCCGAAAGATGACTGTGAAG
GAGCAACAAGAATGGAAGATTCCTCCTTGTATTTCAAACTGGAAAAATGCAAAGGGGTATACAATTCCATTAGACAAACG
TCTGGCTGCTGATGGAAGAGGCCTGCAGACAGTTCACATCAATGAGAATTTTGCTAAGCTGGCCGAAGCCCTCTATATTG
CTGATCGGAAGGCTCGTGAAGCTGTAGAAATGCGTGCTCAAGTAGAGAGAAAGATGGCACAAAAAGAAAAGGAGAAACAT
GAAGAGAAACTTAGAGAAATGGCCCAGAAAGCTAGAGAGAGAAGAGCTGGGATTAAAACTCATGTGGAAAAAGAGGATGG
GGAGGCACGTGAGAGGGATGAAATCCGGCATGACAGGCGAAAAGAGAGACAACACGACCGGAATCTTTCCAGGGCAGCTC
CTGATAAGCGGTCAAAACTACAGAGAAATGAAAATCGAGATATCAGTGAAGTCATTGCTCTTGGTGTGCCCAATCCGCGG
ACGTCCAATGAAGTTCAGTATGACCAAAGGCTCTTCAACCAGTCGAAGGGTATGGACAGTGGTTTTGCAGGTGGAGAAGA
CGAAATTTACAACGTTTATGATCAAGCCTGGAGAGGTGGTAAAGATATGGCCCAGAATATTTACAGGCCCAGTAAAAATC
TGGACAAGGACATGTATGGTGATGACCTAGAAGCCAGAATAAAGACCAACAGATTTGTTCCCGATAAGGAGTTTTCTGGT
TCAGACCGTAGGCAAAGAGGCCGAGAAGGACCAGTTCAGTTTGAGGAAGATCCTTTTGGTTTGGACAAGTTTTTGGAAGA
GGCCAAACAGCACGGTGGCTCTAAAAGACCCTCAGACAGCAGCCGCCCCAAGGAACATGAGCATGAAGGCAAGAAGAGGA
GGAAGGAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 11 .91 RPM
SRP017611_kidney 18 .03 RPM
SRP017611_liver 7 .54 RPM
SRP012049_cerebellum 19 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003976 ortholog_one2many 2 retrogenes
retro_amel_163, retro_amel_912,
Callithrix jacchus ENSCJAG00000016947 ortholog_one2many 2 retrogenes
retro_cjac_2932, retro_cjac_576,
Dipodomys ordii ENSDORG00000012380 ortholog_one2many 3 retrogenes
retro_dord_693, retro_dord_781, retro_dord_782,
Felis catus ENSFCAG00000001637 ortholog_one2many 1 retrogene
retro_fcat_635,
Homo sapiens ENSG00000100603 ortholog_one2many 1 retrogene
retro_hsap_174,
Gorilla gorilla ENSGGOG00000026016 ortholog_one2many 1 retrogene
retro_ggor_257,
Loxodonta africana ENSLAFG00000003482 ortholog_one2many 2 retrogenes
retro_lafr_474, retro_lafr_787,
Myotis lucifugus ENSMLUG00000005228 ortholog_many2many 2 retrogenes
retro_mluc_387, retro_mluc_805,
Monodelphis domestica ENSMODG00000005252 ortholog_one2many 1 retrogene
retro_mdom_1841,
Mustela putorius furo ENSMPUG00000008724 ortholog_one2many 1 retrogene
retro_mputfur_551,
Mus musculus ENSMUSG00000021039 ortholog_one2many 2 retrogenes
retro_mmus_1022, retro_mmus_387,
Nomascus leucogenys ENSNLEG00000016771 ortholog_one2many 1 retrogene
retro_nleu_982,
Otolemur garnettii ENSOGAG00000029825 ortholog_one2many 1 retrogene
retro_ogar_1404,
Ochotona princeps ENSOPRG00000007568 ortholog_one2many 1 retrogene
retro_opri_737,
Pongo abelii ENSPPYG00000006031 ortholog_one2many 1 retrogene
retro_pabe_454,
Pan troglodytes ENSPTRG00000006587 ortholog_one2many 1 retrogene
retro_ptro_165,
Sorex araneus ENSSARG00000002279 ortholog_one2many 3 retrogenes
retro_sara_403, retro_sara_568, retro_sara_727,
Tupaia belangeri ENSTBEG00000014074 ortholog_one2many 3 retrogenes
retro_tbel_2575, retro_tbel_2927, retro_tbel_3536,
Taeniopygia guttata ENSTGUG00000012340 ortholog_one2many 2 retrogenes
retro_tgut_15, retro_tgut_30,
Tarsius syrichta ENSTSYG00000010951 ortholog_one2many 1 retrogene
retro_tsyr_1871,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_195 99.44 99.25
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Download FASTA sequences of all ENSCAFG00000030409 retrocopies