Parental gene: | Snw1, ENSMUSG00000021039 |
| Aliases: | Snw1, 2310008B08Rik, AW048543, NCoA-62, SKIP, Skiip |
| Description: | SNW domain containing 1 [Source:MGI Symbol;Acc:MGI:1913604] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 12:87449935..87472299(-) |
>ENSMUSG00000021039
ATGGCGCTCACCAGCTTTTTACCTGCGCCTACTCAGCTGTCTCAGGACCAACTTGAAGCTGAAGAAAGGGCAAGATCTCA
GAGATCACTGCAGACCTCTCTGGTCTCCTCTCGAAGGGAGCCTCCCCCATACGGATATAGGAAAGGCTGGATTCCAAGAC
TATTAGAGGATTTTGGAGATGGAGGTGCTTTCCCAGAAATCCATGTGGCCCAGTATCCTCTGGATATGGGGCGAAAGAAA
AAAATGTCGAATGCTCTGGCCATTCAGGTGGATCCTGAAGGGAAAATTAAGTATGATGCAATTGCTCGGCAGGGACAGTC
CAAAGACAAGGTCATTTACAGCAAATACACTGACCTGGTTCCTAAGGAGGTTATGAATGCAGATGACCCAGACCTGCAAC
GGCCCGATGAAGAGGCAATTAAAGAGATAACAGAAAAGACTAGAGTTGCCTTGGAGAAATCTGTGTCGCAGAAGGTTGCT
GCAGCCATGCCAGTTCGTGCAGCTGACAAGCTGGCTCCTGCTCAGTATATCCGCTACACACCATCTCAGCAAGGAGTAGC
ATTCAATTCTGGAGCTAAACAGAGGGTCATTCGGATGGTAGAAATGCAGAAAGACCCAATGGAGCCTCCAAGATTCAAGA
TTAATAAGAAAATTCCCCGGGGACCACCGTCTCCTCCTGCACCTGTAATGCACTCTCCTAGTCGGAAGATGACTGTAAAG
GAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGGAAGAACGCTAAGGGGTATACGATCCCATTAGATAAACG
GCTGGCTGCTGATGGAAGAGGACTTCAGACTGTCCACATAAATGAAAATTTTGCCAAACTGGCTGAAGCGCTCTACATTG
CTGATCGGAAGGCTCGTGAAGCGGTGGAAATGCGAGCCCAGGTAGAGAGAAAGATGGCTCAAAAAGAAAAGGAGAAACAT
GAAGAGAAACTTAGAGAAATGGCCCAGAAAGCCAGAGAAAGGAGAGCTGGAATCAAAACCCACGTGGAGAAAGAGGATGG
AGAGGCCCGTGAGAGAGATGAAATCCGTCATGACAGGCGAAAAGAGAGACAGCATGACCGGAACCTTTCCAGGGCAGCTC
CTGATAAGAGGTCAAAACTACAGAGAAATGAAAATCGAGACATCAGTGAAGTCATTGCTCTTGGTGTGCCCAATCCTCGA
ACTTCCAATGAAGTTCAGTATGACCAAAGGCTCTTCAACCAATCCAAGGGTATGGACAGTGGATTTGCAGGTGGAGAAGA
TGAAATTTACAATGTTTATGATCAAGCCTGGAGAGGTGGGAAAGATATGGCCCAGAGCATCTACAGGCCCAGTAAAAATC
TGGACAAGGACATGTATGGTGATGACCTGGAAGCCAGGATAAAGACCAACAGATTTGTTCCTGATAAGGAGTTTTCTGGA
TCAGACCGCAAACAGAGAGGCCGAGAAGGACCAGTGCAGTTTGAGGAGGATCCTTTTGGTTTGGACAAGTTTTTGGAAGA
AGCCAAACAGCACGGTGGTTCTAAAAGACCCTCTGATAGCAGTCGCCCCAAGGAACATGAGCATGAAGGCAAGAAGCGGA
GGAAAGAGTAG
ATGGCGCTCACCAGCTTTTTACCTGCGCCTACTCAGCTGTCTCAGGACCAACTTGAAGCTGAAGAAAGGGCAAGATCTCA
GAGATCACTGCAGACCTCTCTGGTCTCCTCTCGAAGGGAGCCTCCCCCATACGGATATAGGAAAGGCTGGATTCCAAGAC
TATTAGAGGATTTTGGAGATGGAGGTGCTTTCCCAGAAATCCATGTGGCCCAGTATCCTCTGGATATGGGGCGAAAGAAA
AAAATGTCGAATGCTCTGGCCATTCAGGTGGATCCTGAAGGGAAAATTAAGTATGATGCAATTGCTCGGCAGGGACAGTC
CAAAGACAAGGTCATTTACAGCAAATACACTGACCTGGTTCCTAAGGAGGTTATGAATGCAGATGACCCAGACCTGCAAC
GGCCCGATGAAGAGGCAATTAAAGAGATAACAGAAAAGACTAGAGTTGCCTTGGAGAAATCTGTGTCGCAGAAGGTTGCT
GCAGCCATGCCAGTTCGTGCAGCTGACAAGCTGGCTCCTGCTCAGTATATCCGCTACACACCATCTCAGCAAGGAGTAGC
ATTCAATTCTGGAGCTAAACAGAGGGTCATTCGGATGGTAGAAATGCAGAAAGACCCAATGGAGCCTCCAAGATTCAAGA
TTAATAAGAAAATTCCCCGGGGACCACCGTCTCCTCCTGCACCTGTAATGCACTCTCCTAGTCGGAAGATGACTGTAAAG
GAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGGAAGAACGCTAAGGGGTATACGATCCCATTAGATAAACG
GCTGGCTGCTGATGGAAGAGGACTTCAGACTGTCCACATAAATGAAAATTTTGCCAAACTGGCTGAAGCGCTCTACATTG
CTGATCGGAAGGCTCGTGAAGCGGTGGAAATGCGAGCCCAGGTAGAGAGAAAGATGGCTCAAAAAGAAAAGGAGAAACAT
GAAGAGAAACTTAGAGAAATGGCCCAGAAAGCCAGAGAAAGGAGAGCTGGAATCAAAACCCACGTGGAGAAAGAGGATGG
AGAGGCCCGTGAGAGAGATGAAATCCGTCATGACAGGCGAAAAGAGAGACAGCATGACCGGAACCTTTCCAGGGCAGCTC
CTGATAAGAGGTCAAAACTACAGAGAAATGAAAATCGAGACATCAGTGAAGTCATTGCTCTTGGTGTGCCCAATCCTCGA
ACTTCCAATGAAGTTCAGTATGACCAAAGGCTCTTCAACCAATCCAAGGGTATGGACAGTGGATTTGCAGGTGGAGAAGA
TGAAATTTACAATGTTTATGATCAAGCCTGGAGAGGTGGGAAAGATATGGCCCAGAGCATCTACAGGCCCAGTAAAAATC
TGGACAAGGACATGTATGGTGATGACCTGGAAGCCAGGATAAAGACCAACAGATTTGTTCCTGATAAGGAGTTTTCTGGA
TCAGACCGCAAACAGAGAGGCCGAGAAGGACCAGTGCAGTTTGAGGAGGATCCTTTTGGTTTGGACAAGTTTTTGGAAGA
AGCCAAACAGCACGGTGGTTCTAAAAGACCCTCTGATAGCAGTCGCCCCAAGGAACATGAGCATGAAGGCAAGAAGCGGA
GGAAAGAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 29 .90 RPM |
| SRP007412_cerebellum | 36 .91 RPM |
| SRP007412_heart | 22 .54 RPM |
| SRP007412_kidney | 33 .90 RPM |
| SRP007412_liver | 22 .37 RPM |
| SRP007412_testis | 41 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003976 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000030409 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016947 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000012380 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000001637 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000100603 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000026016 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003482 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005228 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000005252 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000008724 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000016771 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000029825 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000007568 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006031 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006587 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000002279 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000014074 | ortholog_one2one | 3 retrogenes | |
| Taeniopygia guttata | ENSTGUG00000012340 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010951 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_387 | 72.54 | 61.94 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1022 | 84.92 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000021039 retrocopies