RetrogeneDB ID: retro_mluc_213

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429869:45309..46851(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029429
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: SMU1
• Ensembl ID: ENSMLUG00000016097
• Aliases: None
• Description: smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) [Source:HGNC Symbol;Acc:18247]

Sequence

>retro_mluc_213
ATGTCTATCGAAATTGAGTCCTCAGATGTGATCCGTCTTATCATGCAGTACCTGAAGGAGAACAGTTTACACCGGGCACT
AGCCGCCTTACAGGAAGAGACTACTGTGTCTCTGAATACTGTGGAGAGCATTGAGAGTTTCGTGACTGACATTAATAGCG
GCCACTGGGACACAGTTTTACAGGCTATACAGTCTCTGAAATTGCCAGACAAAACCCTCATTGACCTCTATGAACAGGTT
GTTCTGGAATTGATAGAACTCCGTGAATTGGGGGCTGCCAGGTCTCTTCTGAGACAAACTGACCCTATGATCATGTTAAA
ACAAACGCAGCCAGAGCGGTATATTCATCTGGAGAACCTCTTGGCCAGGTCTTATTTTGATCCTCGTGAGGCATATCCAG
ATGGAAGTAGCAAAGAGAAGAGAAGAGCAGCAATTGCTCAGGCCTTAGCTGGGGAAGTCAGTGTGGTGCCTCCATCTCGT
CTCATGGCATTGCTGGGGCAGGCACTGAAGTGGCAGCAGCACCAGGGGTTGCTTCCTCCTGGCATGACCATAGATTTGTT
CCGAGGCAAAGCAGCTGTCAAAGACGTGGAAGAAGAAAAGTTTCCTACACAGCTGAGCAGGCATATTAAGTTTGGTCAGA
AATCACATGTGGAGTGTGCTCGATTTTCTCCAGATGGTCAGTATTTGGTCACTGGGTCTGTTGATGGATTCATTGAAGTA
TGGAACTTCACAACTGGAAAAATCAGGAAGGATCTTAAGTACCAGGCCCAGGATAACTTTATGATGATGGATGATGCTGT
TCTCTGCATGTGTTTCAGCAGAGATACAGAAATGTTAGCAACTGGGGCTCAAGATGGAAAAATCAAGGTCTGGAAAATTC
AGAGTGGACAGTGTTTAAGGAGATTTGAAAGGGCACACAGTAAAGGTGTCACCTGTCTAAGCTTTTCTAAGGATAGCAGT
CAGATCCTCAGTGCCTCTTTTGACCAGACAATTAGAATTCATGGTTTAAAATCTGGGAAGACCCTGAAGGAATTTCGTGG
CCATTCTTCCTTTGTTAATGAAGCAACATTTACACAAGATGGACATTATATTATTAGTTCATCCTCTGATGGCACTGTAA
AGATATGGAATATGAAGACCACAGAATGTTCAAATACCTTTAAATCCCTGGGCAGCACTGCAGGGACAGACATCACTGTC
AACAGTGTGATCCTGCTTCCTAAAAACCCAGAGCACTTTGTGGTGTGCAACAGATCAAACACAGTGGTCATCATGAACAT
GCAAGGGCAGATTGTCAGAAGCTTCAGCTCTGGTAAGAGAGAAGGTGGTGACTTTGTTTGCTGCGCCCTCTCTCCCCGTG
GTGAATGGATTTACTGTGTGGGAGAGGACTTTGTGCTCTACTGTTTTAGCACAGTCACTGGCAAGCTGGAGAGAACTCTG
ACAGTTCATGAGAAGAATGTGATTGGTATTGCACATCATCCTCATCAGAACCTGATTGCTACCTACAGTGAAGATGGACT
CCTAAAACTCTGGAAACCCTAA

Alignment

ORF - retro_mluc_213 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.27 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ISLNVIRLIMIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPD
          .S........IRLIMQYLKENSLHRALA.LQEETTVSLNTV.SIESFV.DINSGHWDTVLQAIQSLKLPD
Retrocopy MSIEIESSDVIRLIMQYLKENSLHRALAALQEETTVSLNTVESIESFVTDINSGHWDTVLQAIQSLKLPD

Parental  KTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEK
          KTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEK
Retrocopy KTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEK

Parental  RRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIK
          RRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIK
Retrocopy RRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIK

Parental  FGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLA
          FGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLA
Retrocopy FGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLA

Parental  TGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSS
          TGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSS
Retrocopy TGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSS

Parental  FVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
          FVNEATFTQDGHYIIS.SSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
Retrocopy FVNEATFTQDGHYIISSSSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN

Parental  TVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGI
          TVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEK.VIGI
Retrocopy TVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKNVIGI

Parental  AHHPHQNLIATYSEDGLLKLWKP
          AHHPHQNLIATYSEDGLLKLWKP
Retrocopy AHHPHQNLIATYSEDGLLKLWKP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_213 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000006212	1 retrocopy	retro_cpor_819,
Dipodomys ordii	ENSDORG00000006011	2 retrocopies	retro_dord_126, retro_dord_137,
Echinops telfairi	ENSETEG00000007953	1 retrocopy	retro_etel_1686,
Homo sapiens	ENSG00000122692	1 retrocopy	retro_hsap_457,
Gorilla gorilla	ENSGGOG00000014802	1 retrocopy	retro_ggor_440,
Myotis lucifugus	ENSMLUG00000000586	3 retrocopies	retro_mluc_2200, retro_mluc_2609, retro_mluc_318,
Myotis lucifugus	ENSMLUG00000002236	1 retrocopy	retro_mluc_11,
Myotis lucifugus	ENSMLUG00000015309	1 retrocopy	retro_mluc_77,
Myotis lucifugus	ENSMLUG00000016097	1 retrocopy	retro_mluc_213 ,
Monodelphis domestica	ENSMODG00000003439	1 retrocopy	retro_mdom_965,
Ochotona princeps	ENSOPRG00000011389	2 retrocopies	retro_opri_19, retro_opri_741,
Pongo abelii	ENSPPYG00000019140	1 retrocopy	retro_pabe_274,
Pan troglodytes	ENSPTRG00000020853	1 retrocopy	retro_ptro_344,