RetrogeneDB ID: retro_mluc_77

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430334:93181..94789(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000008626
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015309
• Aliases: None
• Description: None

Sequence

>retro_mluc_77
AAGCCCAGCTGTGGCTGGGGTTTCTCGGCTCCTGAGCTAGGCATGGCTTCCACAGGAGCTTCCTCCACGGCAACCAAAAC
CAAGGCACCTGATGACCTAGTCGCGCCTGTTGTGAAGAAACCACACATCTACTATGGAAGTTTGGAAGAGAAGGAGAGGG
AGCGTCTGGCCAAAGGAGAATCTGGGATTGTGGGGAAAGAAGGACTTAAAGCAGGAATTGAAGCAGGAAATATTAACATA
ACCTCTGGGGAAGTGTTTGAAATTGAAGAGCACATAAGTGAGCGACAGGCTGAGGTGTTAGCCGAGTTTGAGAGAAGGAA
GCGAGCCCGGCAAATCAATGTTTCCACAGAAGACTCAGAGGTCAAGGCTTGCCTTCGAGCCTTGGGGGAGCCTATCACAC
TTTTTGGAGAGGGTCCTGCTGAAAGAAGAGAAAGGTTAAGAAATATCCTCTCAGTGGTCGGTACTGATGCCTTAAAAACA
ACTAAAAAAGATGATGAGAAATCTAAGAAGTCCAAAGAAGAGTATCAGCATACCTGGTACCATGAAGGACCAAACACCCT
GAAGGTTGCTAGACTATGGATTGCTAATTATTCACTGCCCAGGGCAATGAAACGCTTGGAAGAGGCCCGTCTCCATAAAG
AGATTCCTGAAACAACTAGGACCTCCCAGATGCAAGAGCTGCACAAATCTCTCCGGTCTTTGAATAATTTCTGCAGTCAG
ATTGGGGATGATCGGCCTATCTCCTACTGTCACTTTAGTCCCAATTCCAAAATGCTGGCTACAGCTTGTTGGAGTGGGCT
TTGCAAGCTCTGGTCTGTTCCTGATTGCAACCTCCTTCACACTCTTCGAGGCCATAACACAAATGTAGGAGCAGTTGTAT
TCCATCCGAAATCCACTGTTTCCTTGGACCAAAAAGATGTCAATTTGGCTTCTTGTGCTGCTGATGGTTCTGTGAAACTT
TGGAGCCTTGACAGTGATGAACCAGTGGCAGATATTAAAGGCCATACAGTACGTGTGGCCCGTGTAATGTGGCATCCATC
AGGACGTTTCCTGGGTACCACCTGCTATGACCGCTCATGGCGCTTATGGGATTTGGAAGCTCAAGAGGAGATCCTGCATC
AGGAAGGCCACAGCATGGGTGTGTATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACTGGGGGACTGGATGCA
TTTGGTCGAGTTTGGGACCTGCGTACAGGACGTTGTATCATGTTCCTAGAAGGGCACCTGAAGGAAATCTATGGAATAAA
TTTCTCCCCCAATGGCTATCACATTGCAACCGGCAGTGGTGACAACACCTGCAAAGTATGGGACCTTCGACAGCGGCGCT
GCATCTATACCATCCCTGCCCATCAGAACTTAGTGACTGGTGTCAAATTTGAGCCTCTCCACGGGAATTTCTTGCTCACT
GGTGCCTATGATAACAAGGCCAAGATCTGGACCCATCCAGGCTGGTCCCCACTGAAGACTTTGGCTGGCCACGAAGGCAA
AGTGATGGGCCTAGACATTTCTTCTGGTGGGCAGCTTATAGCCACTTGCTCATATGACAGGACCTTCAAGCTCTGGATGG
CTGAATAG

Alignment

ORF - retro_mluc_77 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.38 %
• Parental protein coverage: 99.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EPGCGWGFAAPEPGMASTRASSTATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLK
          .P.CGWGF.APE.GMAST.ASSTATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGI.GKEGLK
Retrocopy KPSCGWGFSAPELGMASTGASSTATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGIVGKEGLK

Parental  AGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPA
          AGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVST.DSEVKACLRALGEPITLFGEGPA
Retrocopy AGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTEDSEVKACLRALGEPITLFGEGPA

Parental  ERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNTLKVARLWIANYSLPRAMKRLEEAR
          ERRERLRNILSVVGTDALK.TKKDDEKSKKSKEEYQ.TWYHEGPNTLKVARLWIANYSLPRAMKRLEEAR
Retrocopy ERRERLRNILSVVGTDALKTTKKDDEKSKKSKEEYQHTWYHEGPNTLKVARLWIANYSLPRAMKRLEEAR

Parental  LHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLH
          LHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLH
Retrocopy LHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLH

Parental  TLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF
          TLRGHNTNVGA.VFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADI.GHTVRVARVMWHPSGRF
Retrocopy TLRGHNTNVGAVVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIKGHTVRVARVMWHPSGRF

Parental  LGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHL
          LGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHL
Retrocopy LGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHL

Parental  KEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCIYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW
          KEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCIYTIPAHQNLVTGVKFEP.HGNFLLTGAYDN.AKIW
Retrocopy KEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCIYTIPAHQNLVTGVKFEPLHGNFLLTGAYDNKAKIW

Parental  THPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
          THPGWSPLKTLAGHEGKVMGLDISS.GQLIATCSYDRTFKLWMAE
Retrocopy THPGWSPLKTLAGHEGKVMGLDISSGGQLIATCSYDRTFKLWMAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_77 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004571	1 retrocopy	retro_btau_1341,
Cavia porcellus	ENSCPOG00000010747	2 retrocopies	retro_cpor_1531, retro_cpor_548,
Myotis lucifugus	ENSMLUG00000000586	3 retrocopies	retro_mluc_2200, retro_mluc_2609, retro_mluc_318,
Myotis lucifugus	ENSMLUG00000002236	1 retrocopy	retro_mluc_11,
Myotis lucifugus	ENSMLUG00000015309	1 retrocopy	retro_mluc_77 ,
Myotis lucifugus	ENSMLUG00000016097	1 retrocopy	retro_mluc_213,
Otolemur garnettii	ENSOGAG00000007802	1 retrocopy	retro_ogar_2854,