Parental gene: | PRPF4, ENSCPOG00000010747 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_93:5758351..5772442(+) |
>ENSCPOG00000010747
GGCTTTCTCAGAGGTTTCCCGGCTCCGGAGCCCGGCATGGCTTCTTCGCGAGCCTCTTCCACGGCAACCAAAACTAAAGC
ACCCGATGACTTAGTCGCTCCTGTTGTGAAGAAACCACACATCTATTATGGAAGTTTGGAAGAGAAGGAAAGGGAACGCC
TTGCCAAGGGAGAGTCTGGAATTTTGGGAAAAGAAGGACTTAAAGCAGGCATTGAAGCAGGAAATATTAATATAACTTCT
GTAGGAGAGGTATTTGAAATTGAAGAACACATCAGTGAGCGACAGGCAGAAGTATTGGCTGAGTTTGAAAGAAGGAAGCG
AGCTCGACAAATCAACGTTTCCACAGATGACTCAGAAGTCAAGGCTTGCCTCAGAGCCTTGGGGGAACCCATCACACTTT
TTGGAGAGGGCCCTGCTGAAAGAAGAGAAAGGTTAAGAAATATTCTCTCAGTGGTTGGCACTGATGCCGATGATGAGAAA
TCTAAGAAGTCCAAAGAAGAGTATCAGCAAACCTGGTACCATGAAGGACCAAACAGCCTGAAGGTGGCTAGACTGTGGAT
TGCTAATTATTCACTGCCCAGGGCAATGAAACGCTTGGAAGAGGCCCGTCTCCATAAAGAGATTCCTGAGACAACTAGAA
CATCCCAGATGCAAGAGCTGCACAAATCCCTCCGGTCTTTGAATAATTTCTGCAGCCAAATTGGGGACGATCGGCCTATC
TCCTACTGTCACTTTAGTCCCAATTCCAAAATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCC
AGATTGTAACCTCCTTCACACTCTTCGAGGTCATAATACAAATGTAGGAGCAATTGTATTTCATCCCAAGTCCACTGTGT
CATTGGATCAGAAAGATGTCAACCTGGCCTCTTGTGCTGCTGATGGGTCTGTGAAGCTCTGGAGTCTTGACAGTGATGAA
CCAGTGGCAGATATTGAAGGCCATACCGTGCGTGTAGCCCGAGTAATGTGGCATCCATCAGGACGTTTCCTGGGCACCAC
CTGCTATGATCGTTCATGGCGCTTATGGGATTTGGAGGCTCAAGAGGAAATCCTGCATCAGGAGGGTCACAGCATGGGTG
TATATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACTGGGGGCCTGGATGCATTTGGTCGAGTTTGGGACCTG
CGCACAGGACGTTGCATCATGTTCCTAGAAGGCCACCTAAAGGAAATCTACGGAATAAGTTTTTCCCCCAATGGCTACCA
CATTGCAGCTGGCAGAGGTGACAATACCTGCAAAGTGTGGGACCTTCGACAGCGGCGTTGCATCTATACCATCCCTGCCC
ATCAGAACTTAGTGACCGGGGTCAAGTTTGAGCCTATCCATGGGAACTTCTTGCTCACTGGTGCCTATGACAACACAGCC
AAGATCTGGACCCACCCGGGCTGGTCCCCGCTGAAGACTCTGGCAGGCCACGAAGGCAAAGTCATGGGTCTGGACATTTC
TTCTGATGGGCAGCTCATAGCCACTTGCTCATATGATAGGACCTTCAAGCTCTGGATGGCTGAATAG
GGCTTTCTCAGAGGTTTCCCGGCTCCGGAGCCCGGCATGGCTTCTTCGCGAGCCTCTTCCACGGCAACCAAAACTAAAGC
ACCCGATGACTTAGTCGCTCCTGTTGTGAAGAAACCACACATCTATTATGGAAGTTTGGAAGAGAAGGAAAGGGAACGCC
TTGCCAAGGGAGAGTCTGGAATTTTGGGAAAAGAAGGACTTAAAGCAGGCATTGAAGCAGGAAATATTAATATAACTTCT
GTAGGAGAGGTATTTGAAATTGAAGAACACATCAGTGAGCGACAGGCAGAAGTATTGGCTGAGTTTGAAAGAAGGAAGCG
AGCTCGACAAATCAACGTTTCCACAGATGACTCAGAAGTCAAGGCTTGCCTCAGAGCCTTGGGGGAACCCATCACACTTT
TTGGAGAGGGCCCTGCTGAAAGAAGAGAAAGGTTAAGAAATATTCTCTCAGTGGTTGGCACTGATGCCGATGATGAGAAA
TCTAAGAAGTCCAAAGAAGAGTATCAGCAAACCTGGTACCATGAAGGACCAAACAGCCTGAAGGTGGCTAGACTGTGGAT
TGCTAATTATTCACTGCCCAGGGCAATGAAACGCTTGGAAGAGGCCCGTCTCCATAAAGAGATTCCTGAGACAACTAGAA
CATCCCAGATGCAAGAGCTGCACAAATCCCTCCGGTCTTTGAATAATTTCTGCAGCCAAATTGGGGACGATCGGCCTATC
TCCTACTGTCACTTTAGTCCCAATTCCAAAATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCC
AGATTGTAACCTCCTTCACACTCTTCGAGGTCATAATACAAATGTAGGAGCAATTGTATTTCATCCCAAGTCCACTGTGT
CATTGGATCAGAAAGATGTCAACCTGGCCTCTTGTGCTGCTGATGGGTCTGTGAAGCTCTGGAGTCTTGACAGTGATGAA
CCAGTGGCAGATATTGAAGGCCATACCGTGCGTGTAGCCCGAGTAATGTGGCATCCATCAGGACGTTTCCTGGGCACCAC
CTGCTATGATCGTTCATGGCGCTTATGGGATTTGGAGGCTCAAGAGGAAATCCTGCATCAGGAGGGTCACAGCATGGGTG
TATATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACTGGGGGCCTGGATGCATTTGGTCGAGTTTGGGACCTG
CGCACAGGACGTTGCATCATGTTCCTAGAAGGCCACCTAAAGGAAATCTACGGAATAAGTTTTTCCCCCAATGGCTACCA
CATTGCAGCTGGCAGAGGTGACAATACCTGCAAAGTGTGGGACCTTCGACAGCGGCGTTGCATCTATACCATCCCTGCCC
ATCAGAACTTAGTGACCGGGGTCAAGTTTGAGCCTATCCATGGGAACTTCTTGCTCACTGGTGCCTATGACAACACAGCC
AAGATCTGGACCCACCCGGGCTGGTCCCCGCTGAAGACTCTGGCAGGCCACGAAGGCAAAGTCATGGGTCTGGACATTTC
TTCTGATGGGCAGCTCATAGCCACTTGCTCATATGATAGGACCTTCAAGCTCTGGATGGCTGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 7 .14 RPM |
| SRP017611_kidney | 17 .59 RPM |
| SRP017611_brain | 9 .03 RPM |
| SRP040447_lung | 10 .47 RPM |
| SRP040447_skeletal_muscle | 7 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000004571 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006212 | other_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000014790 | other_paralog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000015309 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007802 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_548 | 73.29 | 84.09 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1531 | 91.90 | 92.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000010747 retrocopies