Parental gene:

SMU1, ENSPTRG00000020853

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:33436826..33466524(-)


>ENSPTRG00000020853
ATGTCGATCGAAATCGAATCTTCGGATGTGATCCGCCTTATTATGCAGTACTTGAAGGAGAACAGTTTACATCGGGCGTT
AGCCACCTTGCAGGAGGAGACTACTGTGTCTCTGAATACTGTGGACAGCATTGAGAGTTTTGTGGCTGACATTAACAGTG
GCCATTGGGATACTGTGTTGCAGGCTATACAGTCTCTGAAATTGCCAGACAAAACCCTCATTGACCTCTATGAACAGGTT
GTTCTGGAATTGATAGAGCTCCGTGAATTGGGTGCTGCCAGGTCACTTTTGAGACAGACTGATCCCATGATCATGTTAAA
ACAAACACAGCCAGAGCGATATATTCATCTGGAGAACCTTTTGGCCAGGTCTTACTTTGATCCTCGTGAGGCATACCCAG
ATGGAAGTAGCAAAGAAAAGAGAAGAGCAGCAATTGCCCAGGCCTTAGCTGGCGAAGTCAGTGTGGTGCCTCCATCTCGT
CTCATGGCATTGCTGGGACAGGCACTGAAGTGGCAGCAGCATCAGGGATTGCTTCCTCCTGGTATGACCATAGATTTGTT
TCGAGGCAAGGCAGCTGTCAAAGATGTGGAAGAAGAAAAGTTTCCTACACAACTGAGCAGGCATATTAAGTTTGGTCAGA
AATCACATGTGGAGTGTGCTCGATTTTCTCCAGATGGTCAGTATTTGGTCACTGGGTCTGTTGATGGATTCATTGAAGTA
TGGAACTTTACTACTGGAAAAATCAGAAAGGATCTTAAGTACCAGGCCCAAGATAACTTTATGATGATGGATGATGCTGT
CCTCTGCATGTGTTTCAGCAGAGATACAGAAATGTTAGCAACTGGGGCCCAAGATGGAAAAATCAAGGTGTGGAAGATTC
AGAGTGGACAATGTTTAAGGAGATTTGAGAGGGCACACAGTAAGGGTGTCACCTGTCTAAGCTTTTCTAAGGATAGCAGT
CAGATCCTTAGTGCTTCTTTTGACCAGACAATTAGAATTCATGGTTTAAAATCTGGGAAAACCCTGAAGGAATTTCGTGG
CCATTCCTCCTTTGTTAACGAAGCAACATTTACACAAGATGGACATTACATTATTAGTGCATCCTCTGATGGCACTGTAA
AGATCTGGAATATGAAGACCACAGAATGTTCAAATACCTTTAAATCCCTGGGCAGCACCGCAGGGACAGATATTACCGTC
AACAGTGTGATTCTACTTCCTAAAAACCCCGAGCACTTTGTGGTGTGCAACAGATCAAACACGGTGGTCATCATGAACAT
GCAGGGGCAGATTGTCAGAAGCTTCAGTTCTGGTAAAAGAGAAGGTGGGGACTTTGTTTGCTGTGCCCTCTCTCCCCGTG
GTGAATGGATCTACTGTGTAGGGGAGGACTTTGTGCTCTACTGTTTCAGTACAGTCACTGGCAAACTGGAGAGAACTTTG
ACAGTGCACGAGAAGGATGTGATTGGTATTGCACATCACCCTCATCAGAACCTGATTGCTACCTACAGTGAAGATGGACT
CCTAAAGCTCTGGAAACCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 20 .63 RPM
SRP007412_cerebellum 33 .41 RPM
SRP007412_heart 22 .30 RPM
SRP007412_kidney 22 .07 RPM
SRP007412_liver 19 .61 RPM
SRP007412_testis 42 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006212 ortholog_one2one 1 retrogene
retro_cpor_819,
Homo sapiens ENSG00000122692 ortholog_one2one 1 retrogene
retro_hsap_457,
Gorilla gorilla ENSGGOG00000014802 ortholog_one2one 1 retrogene
retro_ggor_440,
Myotis lucifugus ENSMLUG00000016097 ortholog_one2one 1 retrogene
retro_mluc_213,
Monodelphis domestica ENSMODG00000003439 ortholog_one2one 1 retrogene
retro_mdom_965,
Ochotona princeps ENSOPRG00000011389 ortholog_one2one 2 retrogenes
retro_opri_19, retro_opri_741,
Pongo abelii ENSPPYG00000019140 ortholog_one2one 1 retrogene
retro_pabe_274,
Pan troglodytes ENSPTRG00000008551 within_species_paralog 1 retrogene
retro_ptro_1569,
Pan troglodytes ENSPTRG00000023653 other_paralog 2 retrogenes
retro_ptro_18, retro_ptro_1975,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_344 95.14 100.00
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Download FASTA sequences of all ENSPTRG00000020853 retrocopies