Parental gene:

SMU1, ENSPPYG00000019140

Aliases:None
Description:smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) [Source:HGNC Symbol;Acc:18247]
Organism:Orangutan (Pongo abelii)
Coordinates:9:28573134..28603339(+)


>ENSPPYG00000019140
ATGTCGATCGAAATCGAATCTTCGGATGTGATCCGCCTTATCATGCAGTACTTGAAGGAGAACAGTTTACATCGGGCGTT
AGCCACCTTGCAGGAGGAGACTACTGTGTCTCTGAATACTGTGGACAGCATTGAGAGTTTTGTGGCTGACATTAACAGTG
GTCATTGGGATACTGTGTTGCAGGCTATACAGTCTCTGAAATTGCCAGACAAAACCCTCATTGACCTCTATGAACAGGTT
GTTCTGGAATTGATAGAGCTCCGTGAATTGGGTGCTGCCAGGTCACTTTTGAGACAGACTGATCCCATGATCATGTTAAA
ACAAACACAGCCAGAGAGATATATTCATCTGGAGAACCTTTTGGCCAGGTCTTACTTTGATCCTCGTGAGGCATACCCAG
ATGGAAGTAGCAAAGAAAAGAGAAGAGCAGCAATTGCCCAGGCCTTAGCTGGTGAAGTCAGTGTGGTGCCTCCATCTCGT
CTCATGGCATTGCTGGGACAGGCACTGAAGTGGCAGCAGCATCAGGGATTGCTTCCTCCTGGTATGACCATAGATTTGTT
TCGAGGCAAGGCAGCTGTCAAAGATGTGGAAGAAGAAAAGTTTCCTACACAACTGAGCAGGCATATTAAGTTTGGTCAGA
AATCACATGTGGAGTGTGCTCGATTTTCTCCAGATGGTCAGTATTTGGTCACTGGGTCTGTTGATGGATTCATTGAAGTA
TGGAACTTTACTACTGGAAAAATCAGAAAGGATCTTAAGTACCAGGCCCAAGATAACTTTATGATGATGGATGATGCTGT
CCTCTGCATGTGTTTCAGCAGAGATACAGAAATGTTAGCAACTGGAGCCCAAGATGGAAAAATCAAGGTGTGGAAGATTC
AGAGTGGACAATGTTTAAGGAGATTTGAGAGGGCACACAGTAAGGGTGTCACCTGTCTAAGCTTTTCTAAGGATAGCAGT
CAGATCCTTAGTGCTTCTTTTGACCAGACAATTAGAATTCATGGTTTAAAATCTGGGAAAACCCTGAAGGAATTTCGTGG
CCATTCCTCCTTTGTTAATGAAGCAACATTTACACAAGATGGACATTACATTATTAGTGCATCCTCTGATGGCACTGTAA
AGATCTGGAATATGAAGACCACAGAATGTTCAAATACCTTTAAATCCCTGGGCAGCACCGCAGGGACAGATATTACCGTC
AACAGTGTGATTCTACTTCCTAAAAACCCTGAGCACTTTGTGGTGTGCAACAGATCAAACACGGTGGTCATCATGAACAT
GCAGGGGCAGATTGTCAGAAGCTTCAGTTCTGGTAAAAGAGAAGGTGGGGACTTTGTTTGCTGTGCCCTCTCTCCCCGTG
GTGAATGGATCTACTGTGTAGGGGAAGACTTTGTGCTCTACTGTTTCAGTACAGTCACTGGCAAACTGGAGAGAACTTTG
ACAGTGCATGAGAAGGATGTGATTGGTATTGCACATCACCCTCATCAGAACCTGATTGCTACCTACAGTGAAGATGGACT
CCTAAAGCTCTGGAAACCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 20 .51 RPM
SRP007412_cerebellum 28 .33 RPM
SRP007412_heart 14 .27 RPM
SRP007412_kidney 18 .03 RPM
SRP007412_liver 18 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006212 ortholog_one2one 1 retrogene
retro_cpor_819,
Homo sapiens ENSG00000122692 ortholog_one2one 1 retrogene
retro_hsap_457,
Gorilla gorilla ENSGGOG00000014802 ortholog_one2one 1 retrogene
retro_ggor_440,
Myotis lucifugus ENSMLUG00000016097 ortholog_one2one 1 retrogene
retro_mluc_213,
Monodelphis domestica ENSMODG00000003439 ortholog_one2one 1 retrogene
retro_mdom_965,
Ochotona princeps ENSOPRG00000011389 ortholog_one2one 2 retrogenes
retro_opri_19, retro_opri_741,
Pongo abelii ENSPPYG00000007796 within_species_paralog 1 retrogene
retro_pabe_1932,
Pongo abelii ENSPPYG00000014001 other_paralog 2 retrogenes
retro_pabe_320, retro_pabe_321,
Pan troglodytes ENSPTRG00000020853 ortholog_one2one 1 retrogene
retro_ptro_344,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_274 95.05 78.75
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Download FASTA sequences of all ENSPPYG00000019140 retrocopies