Parental gene:

PCBP1, ENSSTOG00000003635

Aliases:None
Description:poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393322.1:10732150..10754892(+)


>ENSSTOG00000003635
ATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATTCGGCTACTTATGCATGGAAAGGAAGTTGGCAG
TATCATCGGAAAGAAAGGAGAATCGGTTAAGAAGATGCGCGAGGAGAGTGGTGCACGTATCAATATCTCAGAAGGGAATT
GTCCTGAGAGAATTATCACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACCAATAGCACAGCTGCCAGTAGACCCCCGGTCACTCTGAGGCTGGTGGTCCCTGCTAG
TCAGTGTGGCTCTCTCATTGGAAAAGGTGGTTGCAAGATTAAGGAAATACGAGAGAAGAGTACAGGGGCTCAAGTCCAGG
TGGCAGGGGATATGCTCCCCAATTCAACTGAGCGGGCCATCACTATTGCTGGCATTCCGCAATCCATCATTGAGTGTGTC
AAACAGATCTGCGTGGTCATGTTGGAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTCAAGTTCTCC
AGTCATCTTTGCAGGTGGTCAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGATTTGACCAAGCTGCACC
AGTTGGCAATGCAACAGTCTCATTTTCCTATGACGCATGGCAACACCGGATTCAGTGGCATTGAATCCAGCTCTCCAGAG
GTGAAAGGCTATTGGGCAGGTTTGGATGCATCTGCTCAGACTACTTCTCATGAACTCACCATTCCAAACGATTTGATTGG
CTGCATAATCGGGCGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCGAACCCAG
TGGAAGGATCTACCGATAGGCAGGTTACCATCACTGGATCTGCTGCCAGCATTAGCCTGGCTCAGTATCTAATCAACGTC
AGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020757 ortholog_one2one 1 retrogene
retro_btau_175,
Canis familiaris ENSCAFG00000006821 ortholog_one2one 1 retrogene
retro_cfam_54,
Callithrix jacchus ENSCJAG00000018590 ortholog_one2one 2 retrogenes
retro_cjac_3253, retro_cjac_754,
Cavia porcellus ENSCPOG00000000967 possible_ortholog 2 retrogenes
retro_cpor_193, retro_cpor_97,
Dasypus novemcinctus ENSDNOG00000008688 ortholog_one2one 6 retrogenes
retro_dnov_1146, retro_dnov_1399, retro_dnov_1672, retro_dnov_1823, retro_dnov_2434, retro_dnov_452,
Equus caballus ENSECAG00000022389 possible_ortholog 1 retrogene
retro_ecab_67,
Echinops telfairi ENSETEG00000014741 ortholog_one2one 3 retrogenes
retro_etel_1170, retro_etel_2108, retro_etel_840,
Homo sapiens ENSG00000197111 possible_ortholog 2 retrogenes
retro_hsap_4077, retro_hsap_83,
Gorilla gorilla ENSGGOG00000012613 ortholog_one2one 2 retrogenes
retro_ggor_212, retro_ggor_2734,
Microcebus murinus ENSMICG00000011651 possible_ortholog 2 retrogenes
retro_mmur_1226, retro_mmur_1228,
Myotis lucifugus ENSMLUG00000009971 ortholog_one2one 3 retrogenes
retro_mluc_2199, retro_mluc_314, retro_mluc_571,
Macaca mulatta ENSMMUG00000006608 possible_ortholog 2 retrogenes
retro_mmul_1263, retro_mmul_1994,
Mus musculus ENSMUSG00000056851 ortholog_one2one 1 retrogene
retro_mmus_274,
Nomascus leucogenys ENSNLEG00000017693 ortholog_one2one 1 retrogene
retro_nleu_10,
Oryctolagus cuniculus ENSOCUG00000022490 possible_ortholog 3 retrogenes
retro_ocun_10, retro_ocun_1622, retro_ocun_898,
Pongo abelii ENSPPYG00000004581 ortholog_one2one 2 retrogenes
retro_pabe_3346, retro_pabe_92,
Pan troglodytes ENSPTRG00000005018 ortholog_one2one 1 retrogene
retro_ptro_113,
Pteropus vampyrus ENSPVAG00000012284 ortholog_one2one 3 retrogenes
retro_pvam_1168, retro_pvam_1369, retro_pvam_868,
Rattus norvegicus ENSRNOG00000036852 ortholog_one2one 2 retrogenes
retro_rnor_1238, retro_rnor_2088,
Sus scrofa ENSSSCG00000000274 ortholog_one2one 1 retrogene
retro_sscr_61,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_557 86.93 58.43
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2. retro_itri_1522 87.06 51.20
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Download FASTA sequences of all ENSSTOG00000003635 retrocopies